python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-1/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-2/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-3/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-4/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-5/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-6/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-7/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-8/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-9/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-0/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-1/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-2/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-3/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-4/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-5/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-6/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-7/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-8/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-9/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-0/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-1/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-2/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-3/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-4/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-5/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-6/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-7/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-8/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-9/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-0/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-1/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-2/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-3/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-4/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-5/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-6/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-7/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-8/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-9/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-0/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-1/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-2/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-3/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-4/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-5/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-6/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-7/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-8/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-9/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-0/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-1/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-2/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-3/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-4/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-5/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-6/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-7/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-8/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-9/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-0/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-1/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-2/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-3/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-4/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-5/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-6/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-7/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-8/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-9/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-0/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-1/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-2/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-3/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-4/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-5/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-6/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-7/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-8/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-1/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-2/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-3/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-4/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-5/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-6/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-7/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-8/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-9/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-0/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-1/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-2/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-3/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-4/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-5/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-6/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-7/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-8/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-9/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-0/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-1/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-2/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-3/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-4/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-5/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-6/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-7/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-8/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-9/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-0/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-1/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-2/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-3/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-4/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-5/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-6/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-7/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-8/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-9/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-0/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-1/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-2/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-3/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-4/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-5/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-6/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-7/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-8/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-9/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-0/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-1/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-2/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-3/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-4/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-5/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-6/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-7/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-8/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-9/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-0/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-1/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-2/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-3/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-4/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-5/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-6/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-7/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-8/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-9/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-0/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-1/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-2/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-3/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-4/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-5/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-6/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-7/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-8/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-1/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-2/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-3/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-4/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-5/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-6/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-7/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-8/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-9/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-0/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-1/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-2/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-3/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-4/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-5/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-6/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-7/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-8/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-9/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-0/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-1/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-2/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-3/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-4/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-5/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-6/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-7/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-8/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-9/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-0/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-1/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-2/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-3/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-4/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-5/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-6/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-7/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-8/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-9/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-0/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-1/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-2/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-3/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-4/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-5/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-6/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-7/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-8/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-9/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-0/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-1/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-2/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-3/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-4/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-5/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-6/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-7/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-8/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-9/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-0/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-1/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-2/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-3/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-4/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-5/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-6/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-7/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-8/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-9/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-0/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-1/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-2/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-3/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-4/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-5/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-6/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-7/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-8/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-0-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-0-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-0-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-0-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-0-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-0-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-0-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-0-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-0-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-0-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-0-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-0-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-0-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-0-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-0-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-0-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-0-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-0-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-1-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-1-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-1-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-1-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-1-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-1-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-1-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-1-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-1-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-1-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-1-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-1-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-1-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-1-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-1-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-1-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-1-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-1-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-1-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-1-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-2-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-2-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-2-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-2-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-2-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-2-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-2-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-2-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-2-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-2-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-2-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-2-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-2-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-2-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-2-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-2-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-2-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-2-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-2-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-2-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-3-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-3-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-3-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-3-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-3-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-3-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-3-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-3-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-3-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-3-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-3-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-3-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-3-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-3-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-3-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-3-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-3-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-3-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-3-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-3-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-4-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-4-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-4-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-4-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-4-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-4-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-4-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-4-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-4-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-4-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-4-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-4-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-4-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-4-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-4-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-4-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-4-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-4-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-4-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-4-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-5-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-5-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-5-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-5-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-5-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-5-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-5-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-5-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-5-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-5-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-5-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-5-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-5-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-5-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-5-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-5-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-5-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-5-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-5-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-5-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-6-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-6-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-6-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-6-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-6-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-6-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-6-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-6-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-6-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-6-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-6-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-6-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-6-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-6-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-6-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-6-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-6-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-6-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-6-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-6-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-7-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-7-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-7-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-7-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-7-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-7-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-7-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-7-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-7-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-7-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-7-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-7-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-7-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-7-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-7-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-7-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-7-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-7-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-0-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-0-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-0-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-0-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-0-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-0-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-0-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-0-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-0-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-0-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-0-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-0-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-0-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-0-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-0-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-0-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-0-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-0-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-1-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-1-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-1-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-1-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-1-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-1-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-1-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-1-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-1-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-1-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-1-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-1-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-1-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-1-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-1-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-1-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-1-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-1-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-1-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-1-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-2-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-2-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-2-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-2-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-2-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-2-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-2-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-2-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-2-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-2-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-2-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-2-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-2-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-2-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-2-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-2-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-2-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-2-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-2-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-2-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-3-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-3-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-3-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-3-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-3-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-3-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-3-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-3-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-3-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-3-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-3-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-3-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-3-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-3-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-3-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-3-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-3-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-3-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-3-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-3-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-4-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-4-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-4-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-4-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-4-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-4-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-4-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-4-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-4-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-4-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-4-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-4-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-4-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-4-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-4-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-4-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-4-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-4-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-4-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-4-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-5-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-5-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-5-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-5-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-5-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-5-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-5-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-5-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-5-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-5-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-5-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-5-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-5-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-5-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-5-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-5-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-5-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-5-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-5-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-5-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-6-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-6-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-6-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-6-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-6-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-6-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-6-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-6-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-6-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-6-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-6-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-6-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-6-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-6-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-6-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-6-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-6-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-6-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-6-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-6-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-7-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-7-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-7-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-7-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-7-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-7-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-7-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-7-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-7-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-7-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-7-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-7-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-7-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-7-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-7-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-7-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-7-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-7-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-0-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-0-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-0-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-0-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-0-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-0-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-0-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-0-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-0-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-0-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-0-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-0-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-0-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-0-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-0-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-0-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-0-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-0-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-1-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-1-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-1-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-1-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-1-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-1-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-1-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-1-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-1-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-1-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-1-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-1-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-1-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-1-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-1-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-1-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-1-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-1-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-1-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-1-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-2-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-2-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-2-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-2-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-2-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-2-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-2-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-2-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-2-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-2-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-2-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-2-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-2-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-2-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-2-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-2-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-2-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-2-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-2-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-2-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-3-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-3-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-3-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-3-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-3-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-3-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-3-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-3-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-3-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-3-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-3-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-3-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-3-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-3-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-3-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-3-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-3-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-3-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-3-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-3-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-4-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-4-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-4-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-4-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-4-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-4-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-4-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-4-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-4-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-4-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-4-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-4-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-4-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-4-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-4-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-4-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-4-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-4-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-4-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-4-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-5-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-5-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-5-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-5-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-5-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-5-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-5-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-5-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-5-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-5-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-5-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-5-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-5-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-5-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-5-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-5-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-5-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-5-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-5-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-5-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-6-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-6-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-6-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-6-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-6-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-6-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-6-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-6-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-6-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-6-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-6-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-6-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-6-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-6-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-6-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-6-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-6-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-6-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-6-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-6-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-7-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-7-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-7-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-7-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-7-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-7-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-7-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-7-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-7-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-7-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-7-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-7-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-7-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-7-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-7-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-7-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-7-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-7-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-0-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-0-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-0-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-0-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-0-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-0-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-0-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-0-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-0-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-0-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-0-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-0-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-0-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-0-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-0-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-0-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-0-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-0-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-1-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-1-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-1-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-1-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-1-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-1-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-1-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-1-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-1-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-1-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-1-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-1-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-1-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-1-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-1-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-1-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-1-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-1-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-1-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-1-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-2-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-2-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-2-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-2-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-2-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-2-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-2-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-2-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-2-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-2-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-2-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-2-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-2-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-2-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-2-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-2-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-2-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-2-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-2-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-2-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-3-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-3-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-3-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-3-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-3-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-3-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-3-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-3-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-3-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-3-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-3-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-3-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-3-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-3-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-3-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-3-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-3-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-3-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-3-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-3-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-4-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-4-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-4-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-4-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-4-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-4-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-4-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-4-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-4-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-4-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-4-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-4-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-4-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-4-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-4-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-4-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-4-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-4-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-4-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-4-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-5-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-5-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-5-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-5-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-5-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-5-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-5-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-5-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-5-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-5-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-5-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-5-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-5-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-5-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-5-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-5-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-5-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-5-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-5-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-5-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-6-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-6-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-6-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-6-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-6-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-6-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-6-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-6-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-6-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-6-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-6-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-6-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-6-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-6-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-6-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-6-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-6-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-6-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-6-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-6-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-7-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-7-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-7-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-7-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-7-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-7-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-7-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-7-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-7-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-7-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-7-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-7-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-7-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-7-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-7-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-7-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-7-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-7-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-0-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-0-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-0-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-0-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-0-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-0-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-0-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-0-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-0-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-0-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-0-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-0-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-0-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-0-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-0-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-0-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-0-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-0-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-1-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-1-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-1-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-1-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-1-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-1-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-1-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-1-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-1-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-1-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-1-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-1-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-1-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-1-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-1-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-1-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-1-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-1-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-1-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-1-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-2-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-2-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-2-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-2-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-2-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-2-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-2-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-2-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-2-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-2-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-2-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-2-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-2-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-2-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-2-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-2-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-2-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-2-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-2-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-2-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-3-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-3-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-3-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-3-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-3-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-3-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-3-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-3-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-3-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-3-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-3-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-3-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-3-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-3-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-3-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-3-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-3-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-3-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-3-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-3-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-4-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-4-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-4-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-4-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-4-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-4-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-4-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-4-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-4-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-4-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-4-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-4-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-4-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-4-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-4-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-4-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-4-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-4-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-4-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-4-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-5-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-5-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-5-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-5-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-5-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-5-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-5-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-5-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-5-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-5-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-5-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-5-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-5-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-5-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-5-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-5-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-5-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-5-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-5-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-5-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-6-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-6-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-6-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-6-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-6-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-6-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-6-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-6-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-6-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-6-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-6-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-6-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-6-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-6-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-6-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-6-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-6-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-6-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-6-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-6-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-7-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-7-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-7-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-7-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-7-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-7-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-7-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-7-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-7-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-7-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-7-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-7-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-7-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-7-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-7-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-7-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-7-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-7-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-0-1/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-0-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-0-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-0-2/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-0-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-0-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-0-3/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-0-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-0-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-0-4/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-0-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-0-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-0-5/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-0-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-0-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-0-6/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-0-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-0-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-0-7/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-0-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-0-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-0-8/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-0-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-0-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-0-9/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-0-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-0-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-1-0/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-1-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-1-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-1-1/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-1-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-1-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-1-2/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-1-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-1-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-1-3/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-1-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-1-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-1-4/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-1-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-1-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-1-5/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-1-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-1-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-1-6/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-1-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-1-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-1-7/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-1-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-1-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-1-8/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-1-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-1-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-1-9/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-1-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-1-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-2-0/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-2-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-2-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-2-1/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-2-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-2-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-2-2/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-2-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-2-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-2-3/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-2-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-2-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-2-4/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-2-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-2-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-2-5/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-2-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-2-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-2-6/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-2-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-2-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-2-7/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-2-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-2-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-2-8/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-2-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-2-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-2-9/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-2-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-2-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-3-0/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-3-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-3-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-3-1/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-3-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-3-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-3-2/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-3-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-3-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-3-3/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-3-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-3-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-3-4/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-3-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-3-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-3-5/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-3-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-3-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-3-6/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-3-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-3-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-3-7/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-3-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-3-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-3-8/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-3-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-3-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-3-9/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-3-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-3-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-4-0/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-4-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-4-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-4-1/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-4-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-4-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-4-2/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-4-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-4-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-4-3/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-4-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-4-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-4-4/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-4-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-4-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-4-5/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-4-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-4-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-4-6/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-4-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-4-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-4-7/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-4-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-4-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-4-8/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-4-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-4-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-4-9/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-4-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-4-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-5-0/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-5-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-5-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-5-1/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-5-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-5-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-5-2/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-5-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-5-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-5-3/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-5-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-5-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-5-4/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-5-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-5-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-5-5/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-5-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-5-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-5-6/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-5-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-5-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-5-7/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-5-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-5-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-5-8/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-5-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-5-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-5-9/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-5-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-5-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-6-0/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-6-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-6-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-6-1/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-6-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-6-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-6-2/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-6-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-6-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-6-3/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-6-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-6-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-6-4/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-6-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-6-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-6-5/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-6-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-6-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-6-6/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-6-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-6-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-6-7/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-6-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-6-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-6-8/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-6-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-6-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-6-9/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-6-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-6-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-7-0/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-7-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-7-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-7-1/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-7-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-7-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-7-2/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-7-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-7-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-7-3/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-7-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-7-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-7-4/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-7-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-7-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-7-5/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-7-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-7-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-7-6/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-7-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-7-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-7-7/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-7-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-7-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-7-8/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-7-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-7-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-0-1/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-0-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-0-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-0-2/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-0-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-0-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-0-3/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-0-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-0-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-0-4/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-0-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-0-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-0-5/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-0-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-0-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-0-6/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-0-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-0-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-0-7/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-0-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-0-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-0-8/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-0-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-0-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-0-9/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-0-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-0-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-1-0/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-1-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-1-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-1-1/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-1-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-1-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-1-2/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-1-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-1-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-1-3/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-1-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-1-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-1-4/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-1-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-1-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-1-5/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-1-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-1-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-1-6/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-1-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-1-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-1-7/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-1-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-1-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-1-8/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-1-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-1-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-1-9/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-1-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-1-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-2-0/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-2-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-2-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-2-1/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-2-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-2-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-2-2/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-2-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-2-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-2-3/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-2-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-2-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-2-4/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-2-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-2-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-2-5/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-2-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-2-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-2-6/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-2-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-2-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-2-7/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-2-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-2-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-2-8/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-2-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-2-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-2-9/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-2-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-2-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-3-0/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-3-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-3-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-3-1/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-3-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-3-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-3-2/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-3-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-3-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-3-3/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-3-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-3-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-3-4/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-3-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-3-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-3-5/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-3-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-3-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-3-6/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-3-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-3-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-3-7/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-3-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-3-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-3-8/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-3-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-3-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-3-9/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-3-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-3-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-4-0/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-4-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-4-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-4-1/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-4-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-4-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-4-2/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-4-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-4-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-4-3/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-4-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-4-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-4-4/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-4-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-4-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-4-5/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-4-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-4-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-4-6/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-4-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-4-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-4-7/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-4-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-4-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-4-8/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-4-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-4-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-4-9/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-4-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-4-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-5-0/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-5-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-5-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-5-1/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-5-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-5-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-5-2/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-5-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-5-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-5-3/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-5-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-5-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-5-4/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-5-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-5-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-5-5/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-5-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-5-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-5-6/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-5-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-5-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-5-7/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-5-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-5-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-5-8/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-5-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-5-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-5-9/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-5-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-5-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-6-0/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-6-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-6-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-6-1/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-6-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-6-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-6-2/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-6-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-6-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-6-3/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-6-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-6-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-6-4/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-6-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-6-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-6-5/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-6-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-6-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-6-6/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-6-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-6-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-6-7/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-6-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-6-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-6-8/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-6-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-6-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-6-9/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-6-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-6-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-7-0/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-7-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-7-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-7-1/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-7-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-7-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-7-2/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-7-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-7-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-7-3/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-7-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-7-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-7-4/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-7-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-7-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-7-5/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-7-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-7-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-7-6/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-7-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-7-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-7-7/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-7-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-7-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-7-8/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-7-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-7-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-0-1/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-0-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-0-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-0-2/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-0-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-0-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-0-3/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-0-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-0-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-0-4/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-0-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-0-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-0-5/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-0-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-0-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-0-6/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-0-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-0-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-0-7/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-0-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-0-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-0-8/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-0-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-0-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-0-9/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-0-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-0-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-1-0/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-1-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-1-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-1-1/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-1-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-1-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-1-2/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-1-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-1-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-1-3/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-1-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-1-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-1-4/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-1-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-1-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-1-5/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-1-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-1-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-1-6/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-1-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-1-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-1-7/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-1-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-1-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-1-8/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-1-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-1-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-1-9/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-1-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-1-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-2-0/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-2-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-2-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-2-1/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-2-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-2-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-2-2/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-2-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-2-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-2-3/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-2-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-2-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-2-4/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-2-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-2-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-2-5/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-2-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-2-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-2-6/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-2-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-2-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-2-7/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-2-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-2-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-2-8/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-2-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-2-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-2-9/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-2-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-2-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-3-0/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-3-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-3-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-3-1/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-3-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-3-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-3-2/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-3-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-3-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-3-3/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-3-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-3-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-3-4/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-3-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-3-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-3-5/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-3-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-3-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-3-6/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-3-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-3-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-3-7/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-3-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-3-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-3-8/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-3-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-3-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-3-9/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-3-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-3-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-4-0/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-4-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-4-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-4-1/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-4-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-4-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-4-2/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-4-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-4-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-4-3/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-4-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-4-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-4-4/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-4-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-4-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-4-5/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-4-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-4-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-4-6/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-4-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-4-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-4-7/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-4-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-4-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-4-8/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-4-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-4-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-4-9/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-4-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-4-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-5-0/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-5-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-5-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-5-1/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-5-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-5-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-5-2/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-5-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-5-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-5-3/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-5-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-5-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-5-4/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-5-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-5-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-5-5/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-5-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-5-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-5-6/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-5-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-5-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-5-7/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-5-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-5-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-5-8/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-5-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-5-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-5-9/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-5-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-5-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-6-0/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-6-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-6-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-6-1/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-6-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-6-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-6-2/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-6-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-6-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-6-3/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-6-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-6-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-6-4/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-6-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-6-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-6-5/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-6-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-6-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-6-6/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-6-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-6-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-6-7/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-6-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-6-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-6-8/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-6-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-6-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-6-9/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-6-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-6-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-7-0/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-7-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-7-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-7-1/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-7-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-7-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-7-2/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-7-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-7-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-7-3/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-7-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-7-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-7-4/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-7-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-7-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-7-5/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-7-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-7-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-7-6/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-7-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-7-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-7-7/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-7-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-7-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-7-8/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-7-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-7-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-0-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-0-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-0-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-0-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-0-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-0-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-0-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-0-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-0-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-0-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-0-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-0-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-0-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-0-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-0-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-0-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-0-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-0-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-1-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-1-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-1-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-1-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-1-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-1-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-1-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-1-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-1-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-1-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-1-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-1-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-1-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-1-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-1-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-1-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-1-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-1-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-1-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-1-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-2-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-2-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-2-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-2-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-2-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-2-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-2-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-2-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-2-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-2-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-2-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-2-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-2-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-2-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-2-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-2-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-2-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-2-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-2-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-2-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-3-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-3-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-3-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-3-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-3-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-3-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-3-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-3-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-3-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-3-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-3-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-3-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-3-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-3-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-3-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-3-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-3-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-3-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-3-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-3-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-4-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-4-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-4-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-4-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-4-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-4-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-4-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-4-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-4-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-4-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-4-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-4-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-4-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-4-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-4-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-4-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-4-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-4-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-4-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-4-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-5-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-5-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-5-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-5-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-5-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-5-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-5-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-5-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-5-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-5-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-5-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-5-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-5-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-5-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-5-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-5-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-5-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-5-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-5-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-5-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-6-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-6-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-6-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-6-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-6-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-6-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-6-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-6-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-6-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-6-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-6-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-6-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-6-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-6-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-6-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-6-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-6-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-6-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-6-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-6-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-7-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-7-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-7-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-7-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-7-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-7-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-7-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-7-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-7-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-7-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-7-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-7-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-7-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-7-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-7-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-7-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-7-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-7-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-0-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-0-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-0-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-0-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-0-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-0-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-0-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-0-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-0-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-0-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-0-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-0-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-0-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-0-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-0-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-0-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-0-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-0-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-1-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-1-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-1-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-1-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-1-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-1-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-1-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-1-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-1-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-1-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-1-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-1-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-1-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-1-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-1-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-1-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-1-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-1-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-1-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-1-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-2-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-2-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-2-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-2-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-2-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-2-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-2-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-2-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-2-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-2-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-2-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-2-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-2-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-2-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-2-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-2-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-2-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-2-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-2-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-2-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-3-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-3-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-3-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-3-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-3-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-3-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-3-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-3-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-3-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-3-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-3-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-3-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-3-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-3-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-3-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-3-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-3-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-3-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-3-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-3-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-4-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-4-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-4-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-4-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-4-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-4-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-4-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-4-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-4-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-4-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-4-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-4-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-4-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-4-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-4-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-4-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-4-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-4-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-4-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-4-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-5-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-5-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-5-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-5-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-5-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-5-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-5-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-5-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-5-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-5-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-5-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-5-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-5-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-5-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-5-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-5-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-5-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-5-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-5-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-5-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-6-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-6-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-6-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-6-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-6-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-6-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-6-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-6-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-6-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-6-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-6-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-6-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-6-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-6-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-6-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-6-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-6-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-6-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-6-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-6-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-7-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-7-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-7-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-7-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-7-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-7-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-7-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-7-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-7-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-7-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-7-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-7-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-7-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-7-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-7-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-7-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-7-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-7-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-0-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-0-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-0-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-0-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-0-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-0-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-0-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-0-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-0-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-0-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-0-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-0-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-0-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-0-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-0-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-0-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-0-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-0-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-1-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-1-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-1-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-1-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-1-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-1-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-1-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-1-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-1-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-1-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-1-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-1-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-1-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-1-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-1-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-1-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-1-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-1-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-1-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-1-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-2-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-2-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-2-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-2-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-2-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-2-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-2-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-2-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-2-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-2-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-2-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-2-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-2-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-2-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-2-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-2-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-2-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-2-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-2-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-2-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-3-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-3-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-3-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-3-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-3-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-3-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-3-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-3-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-3-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-3-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-3-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-3-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-3-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-3-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-3-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-3-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-3-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-3-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-3-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-3-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-4-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-4-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-4-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-4-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-4-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-4-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-4-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-4-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-4-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-4-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-4-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-4-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-4-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-4-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-4-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-4-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-4-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-4-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-4-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-4-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-5-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-5-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-5-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-5-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-5-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-5-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-5-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-5-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-5-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-5-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-5-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-5-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-5-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-5-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-5-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-5-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-5-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-5-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-5-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-5-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-6-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-6-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-6-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-6-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-6-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-6-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-6-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-6-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-6-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-6-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-6-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-6-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-6-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-6-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-6-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-6-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-6-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-6-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-6-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-6-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-7-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-7-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-7-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-7-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-7-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-7-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-7-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-7-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-7-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-7-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-7-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-7-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-7-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-7-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-7-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-7-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-7-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-7-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-0-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-0-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-0-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-0-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-0-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-0-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-0-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-0-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-0-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-0-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-0-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-0-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-0-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-0-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-0-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-0-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-0-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-0-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-1-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-1-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-1-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-1-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-1-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-1-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-1-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-1-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-1-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-1-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-1-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-1-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-1-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-1-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-1-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-1-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-1-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-1-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-1-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-1-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-2-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-2-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-2-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-2-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-2-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-2-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-2-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-2-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-2-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-2-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-2-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-2-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-2-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-2-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-2-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-2-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-2-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-2-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-2-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-2-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-3-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-3-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-3-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-3-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-3-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-3-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-3-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-3-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-3-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-3-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-3-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-3-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-3-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-3-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-3-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-3-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-3-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-3-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-3-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-3-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-4-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-4-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-4-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-4-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-4-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-4-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-4-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-4-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-4-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-4-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-4-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-4-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-4-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-4-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-4-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-4-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-4-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-4-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-4-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-4-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-5-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-5-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-5-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-5-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-5-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-5-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-5-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-5-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-5-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-5-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-5-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-5-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-5-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-5-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-5-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-5-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-5-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-5-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-5-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-5-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-6-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-6-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-6-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-6-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-6-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-6-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-6-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-6-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-6-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-6-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-6-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-6-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-6-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-6-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-6-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-6-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-6-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-6-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-6-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-6-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-7-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-7-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-7-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-7-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-7-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-7-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-7-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-7-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-7-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-7-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-7-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-7-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-7-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-7-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-7-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-7-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-7-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-7-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-0-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-0-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-0-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-0-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-0-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-0-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-0-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-0-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-0-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-0-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-0-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-0-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-0-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-0-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-0-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-0-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-0-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-0-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-1-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-1-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-1-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-1-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-1-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-1-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-1-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-1-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-1-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-1-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-1-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-1-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-1-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-1-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-1-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-1-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-1-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-1-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-1-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-1-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-2-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-2-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-2-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-2-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-2-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-2-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-2-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-2-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-2-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-2-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-2-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-2-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-2-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-2-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-2-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-2-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-2-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-2-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-2-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-2-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-3-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-3-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-3-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-3-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-3-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-3-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-3-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-3-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-3-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-3-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-3-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-3-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-3-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-3-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-3-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-3-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-3-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-3-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-3-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-3-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-4-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-4-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-4-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-4-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-4-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-4-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-4-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-4-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-4-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-4-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-4-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-4-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-4-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-4-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-4-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-4-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-4-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-4-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-4-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-4-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-5-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-5-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-5-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-5-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-5-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-5-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-5-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-5-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-5-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-5-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-5-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-5-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-5-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-5-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-5-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-5-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-5-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-5-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-5-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-5-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-6-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-6-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-6-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-6-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-6-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-6-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-6-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-6-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-6-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-6-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-6-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-6-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-6-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-6-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-6-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-6-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-6-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-6-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-6-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-6-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-7-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-7-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-7-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-7-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-7-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-7-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-7-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-7-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-7-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-7-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-7-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-7-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-7-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-7-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-7-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-7-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-7-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-7-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-0-1/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-0-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-0-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-0-2/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-0-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-0-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-0-3/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-0-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-0-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-0-4/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-0-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-0-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-0-5/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-0-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-0-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-0-6/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-0-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-0-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-0-7/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-0-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-0-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-0-8/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-0-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-0-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-0-9/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-0-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-0-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-1-0/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-1-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-1-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-1-1/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-1-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-1-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-1-2/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-1-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-1-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-1-3/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-1-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-1-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-1-4/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-1-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-1-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-1-5/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-1-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-1-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-1-6/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-1-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-1-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-1-7/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-1-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-1-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-1-8/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-1-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-1-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-1-9/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-1-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-1-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-2-0/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-2-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-2-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-2-1/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-2-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-2-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-2-2/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-2-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-2-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-2-3/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-2-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-2-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-2-4/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-2-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-2-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-2-5/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-2-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-2-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-2-6/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-2-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-2-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-2-7/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-2-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-2-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-2-8/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-2-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-2-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-2-9/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-2-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-2-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-3-0/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-3-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-3-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-3-1/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-3-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-3-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-3-2/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-3-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-3-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-3-3/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-3-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-3-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-3-4/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-3-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-3-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-3-5/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-3-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-3-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-3-6/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-3-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-3-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-3-7/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-3-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-3-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-3-8/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-3-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-3-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-3-9/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-3-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-3-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-4-0/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-4-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-4-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-4-1/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-4-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-4-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-4-2/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-4-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-4-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-4-3/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-4-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-4-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-4-4/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-4-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-4-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-4-5/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-4-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-4-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-4-6/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-4-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-4-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-4-7/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-4-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-4-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-4-8/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-4-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-4-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-4-9/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-4-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-4-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-5-0/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-5-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-5-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-5-1/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-5-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-5-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-5-2/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-5-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-5-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-5-3/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-5-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-5-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-5-4/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-5-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-5-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-5-5/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-5-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-5-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-5-6/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-5-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-5-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-5-7/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-5-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-5-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-5-8/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-5-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-5-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-5-9/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-5-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-5-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-6-0/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-6-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-6-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-6-1/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-6-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-6-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-6-2/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-6-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-6-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-6-3/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-6-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-6-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-6-4/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-6-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-6-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-6-5/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-6-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-6-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-6-6/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-6-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-6-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-6-7/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-6-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-6-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-6-8/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-6-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-6-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-6-9/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-6-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-6-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-7-0/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-7-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-7-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-7-1/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-7-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-7-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-7-2/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-7-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-7-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-7-3/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-7-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-7-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-7-4/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-7-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-7-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-7-5/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-7-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-7-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-7-6/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-7-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-7-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-7-7/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-7-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-7-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-7-8/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-7-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-7-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-0-1/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-0-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-0-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-0-2/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-0-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-0-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-0-3/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-0-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-0-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-0-4/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-0-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-0-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-0-5/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-0-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-0-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-0-6/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-0-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-0-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-0-7/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-0-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-0-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-0-8/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-0-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-0-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-0-9/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-0-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-0-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-1-0/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-1-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-1-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-1-1/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-1-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-1-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-1-2/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-1-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-1-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-1-3/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-1-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-1-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-1-4/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-1-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-1-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-1-5/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-1-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-1-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-1-6/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-1-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-1-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-1-7/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-1-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-1-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-1-8/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-1-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-1-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-1-9/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-1-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-1-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-2-0/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-2-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-2-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-2-1/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-2-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-2-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-2-2/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-2-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-2-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-2-3/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-2-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-2-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-2-4/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-2-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-2-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-2-5/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-2-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-2-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-2-6/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-2-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-2-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-2-7/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-2-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-2-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-2-8/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-2-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-2-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-2-9/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-2-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-2-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-3-0/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-3-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-3-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-3-1/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-3-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-3-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-3-2/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-3-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-3-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-3-3/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-3-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-3-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-3-4/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-3-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-3-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-3-5/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-3-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-3-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-3-6/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-3-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-3-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-3-7/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-3-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-3-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-3-8/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-3-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-3-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-3-9/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-3-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-3-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-4-0/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-4-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-4-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-4-1/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-4-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-4-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-4-2/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-4-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-4-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-4-3/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-4-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-4-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-4-4/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-4-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-4-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-4-5/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-4-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-4-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-4-6/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-4-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-4-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-4-7/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-4-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-4-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-4-8/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-4-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-4-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-4-9/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-4-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-4-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-5-0/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-5-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-5-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-5-1/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-5-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-5-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-5-2/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-5-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-5-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-5-3/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-5-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-5-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-5-4/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-5-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-5-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-5-5/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-5-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-5-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-5-6/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-5-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-5-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-5-7/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-5-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-5-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-5-8/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-5-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-5-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-5-9/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-5-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-5-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-6-0/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-6-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-6-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-6-1/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-6-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-6-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-6-2/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-6-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-6-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-6-3/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-6-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-6-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-6-4/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-6-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-6-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-6-5/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-6-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-6-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-6-6/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-6-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-6-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-6-7/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-6-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-6-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-6-8/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-6-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-6-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-6-9/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-6-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-6-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-7-0/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-7-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-7-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-7-1/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-7-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-7-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-7-2/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-7-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-7-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-7-3/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-7-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-7-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-7-4/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-7-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-7-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-7-5/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-7-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-7-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-7-6/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-7-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-7-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-7-7/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-7-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-7-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-7-8/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-7-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-7-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-0-1/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-0-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-0-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-0-2/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-0-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-0-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-0-3/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-0-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-0-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-0-4/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-0-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-0-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-0-5/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-0-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-0-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-0-6/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-0-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-0-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-0-7/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-0-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-0-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-0-8/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-0-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-0-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-0-9/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-0-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-0-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-1-0/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-1-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-1-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-1-1/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-1-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-1-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-1-2/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-1-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-1-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-1-3/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-1-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-1-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-1-4/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-1-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-1-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-1-5/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-1-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-1-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-1-6/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-1-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-1-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-1-7/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-1-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-1-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-1-8/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-1-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-1-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-1-9/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-1-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-1-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-2-0/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-2-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-2-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-2-1/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-2-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-2-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-2-2/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-2-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-2-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-2-3/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-2-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-2-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-2-4/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-2-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-2-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-2-5/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-2-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-2-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-2-6/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-2-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-2-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-2-7/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-2-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-2-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-2-8/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-2-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-2-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-2-9/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-2-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-2-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-3-0/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-3-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-3-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-3-1/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-3-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-3-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-3-2/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-3-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-3-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-3-3/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-3-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-3-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-3-4/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-3-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-3-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-3-5/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-3-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-3-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-3-6/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-3-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-3-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-3-7/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-3-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-3-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-3-8/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-3-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-3-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-3-9/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-3-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-3-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-4-0/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-4-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-4-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-4-1/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-4-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-4-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-4-2/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-4-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-4-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-4-3/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-4-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-4-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-4-4/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-4-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-4-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-4-5/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-4-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-4-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-4-6/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-4-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-4-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-4-7/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-4-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-4-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-4-8/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-4-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-4-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-4-9/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-4-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-4-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-5-0/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-5-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-5-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-5-1/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-5-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-5-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-5-2/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-5-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-5-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-5-3/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-5-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-5-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-5-4/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-5-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-5-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-5-5/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-5-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-5-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-5-6/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-5-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-5-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-5-7/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-5-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-5-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-5-8/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-5-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-5-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-5-9/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-5-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-5-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-6-0/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-6-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-6-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-6-1/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-6-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-6-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-6-2/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-6-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-6-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-6-3/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-6-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-6-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-6-4/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-6-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-6-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-6-5/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-6-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-6-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-6-6/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-6-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-6-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-6-7/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-6-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-6-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-6-8/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-6-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-6-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-6-9/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-6-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-6-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-7-0/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-7-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-7-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-7-1/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-7-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-7-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-7-2/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-7-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-7-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-7-3/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-7-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-7-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-7-4/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-7-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-7-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-7-5/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-7-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-7-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-7-6/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-7-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-7-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-7-7/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-7-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-7-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-7-8/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-7-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-7-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-1/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-2/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-3/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-4/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-5/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-6/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-7/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-8/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-9/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-0/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-1/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-2/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-3/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-4/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-5/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-6/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-7/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-8/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-9/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-0/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-1/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-2/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-3/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-4/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-5/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-6/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-7/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-8/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-9/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-0/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-1/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-2/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-3/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-4/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-5/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-6/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-7/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-8/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-9/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-0/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-1/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-2/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-3/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-4/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-5/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-6/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-7/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-8/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-9/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-0/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-1/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-2/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-3/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-4/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-5/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-6/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-7/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-8/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-9/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-0/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-1/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-2/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-3/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-4/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-5/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-6/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-7/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-8/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-9/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-0/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-1/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-2/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-3/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-4/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-5/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-6/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-7/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-8/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-1/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-2/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-3/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-4/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-5/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-6/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-7/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-8/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-9/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-0/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-1/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-2/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-3/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-4/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-5/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-6/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-7/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-8/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-9/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-0/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-1/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-2/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-3/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-4/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-5/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-6/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-7/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-8/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-9/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-0/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-1/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-2/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-3/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-4/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-5/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-6/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-7/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-8/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-9/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-0/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-1/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-2/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-3/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-4/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-5/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-6/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-7/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-8/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-9/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-0/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-1/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-2/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-3/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-4/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-5/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-6/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-7/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-8/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-9/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-0/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-1/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-2/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-3/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-4/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-5/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-6/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-7/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-8/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-9/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-0/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-1/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-2/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-3/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-4/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-5/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-6/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-7/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-8/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-1/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-2/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-3/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-4/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-5/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-6/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-7/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-8/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-9/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-0/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-1/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-2/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-3/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-4/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-5/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-6/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-7/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-8/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-9/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-0/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-1/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-2/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-3/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-4/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-5/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-6/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-7/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-8/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-9/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-0/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-1/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-2/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-3/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-4/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-5/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-6/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-7/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-8/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-9/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-0/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-1/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-2/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-3/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-4/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-5/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-6/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-7/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-8/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-9/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-0/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-1/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-2/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-3/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-4/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-5/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-6/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-7/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-8/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-9/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-0/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-1/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-2/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-3/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-4/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-5/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-6/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-7/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-8/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-9/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-0/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-1/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-2/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-3/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-4/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-5/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-6/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-7/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-8/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-0-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-0-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-0-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-0-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-0-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-0-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-0-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-0-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-0-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-0-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-0-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-0-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-0-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-0-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-0-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-0-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-0-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-0-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-1-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-1-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-1-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-1-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-1-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-1-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-1-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-1-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-1-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-1-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-1-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-1-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-1-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-1-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-1-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-1-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-1-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-1-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-1-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-1-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-2-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-2-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-2-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-2-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-2-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-2-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-2-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-2-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-2-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-2-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-2-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-2-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-2-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-2-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-2-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-2-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-2-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-2-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-2-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-2-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-3-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-3-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-3-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-3-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-3-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-3-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-3-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-3-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-3-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-3-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-3-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-3-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-3-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-3-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-3-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-3-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-3-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-3-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-3-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-3-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-4-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-4-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-4-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-4-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-4-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-4-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-4-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-4-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-4-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-4-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-4-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-4-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-4-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-4-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-4-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-4-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-4-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-4-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-4-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-4-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-5-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-5-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-5-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-5-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-5-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-5-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-5-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-5-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-5-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-5-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-5-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-5-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-5-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-5-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-5-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-5-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-5-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-5-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-5-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-5-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-6-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-6-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-6-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-6-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-6-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-6-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-6-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-6-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-6-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-6-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-6-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-6-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-6-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-6-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-6-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-6-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-6-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-6-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-6-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-6-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-7-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-7-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-7-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-7-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-7-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-7-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-7-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-7-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-7-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-7-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-7-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-7-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-7-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-7-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-7-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-7-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-7-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-7-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-0-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-0-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-0-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-0-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-0-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-0-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-0-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-0-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-0-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-0-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-0-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-0-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-0-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-0-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-0-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-0-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-0-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-0-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-1-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-1-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-1-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-1-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-1-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-1-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-1-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-1-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-1-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-1-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-1-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-1-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-1-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-1-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-1-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-1-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-1-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-1-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-1-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-1-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-2-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-2-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-2-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-2-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-2-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-2-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-2-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-2-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-2-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-2-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-2-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-2-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-2-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-2-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-2-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-2-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-2-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-2-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-2-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-2-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-3-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-3-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-3-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-3-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-3-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-3-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-3-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-3-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-3-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-3-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-3-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-3-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-3-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-3-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-3-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-3-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-3-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-3-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-3-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-3-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-4-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-4-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-4-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-4-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-4-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-4-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-4-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-4-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-4-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-4-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-4-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-4-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-4-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-4-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-4-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-4-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-4-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-4-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-4-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-4-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-5-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-5-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-5-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-5-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-5-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-5-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-5-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-5-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-5-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-5-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-5-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-5-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-5-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-5-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-5-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-5-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-5-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-5-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-5-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-5-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-6-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-6-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-6-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-6-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-6-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-6-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-6-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-6-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-6-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-6-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-6-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-6-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-6-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-6-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-6-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-6-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-6-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-6-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-6-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-6-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-7-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-7-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-7-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-7-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-7-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-7-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-7-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-7-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-7-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-7-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-7-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-7-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-7-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-7-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-7-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-7-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-7-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-7-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-0-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-0-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-0-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-0-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-0-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-0-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-0-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-0-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-0-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-0-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-0-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-0-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-0-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-0-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-0-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-0-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-0-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-0-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-1-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-1-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-1-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-1-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-1-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-1-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-1-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-1-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-1-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-1-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-1-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-1-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-1-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-1-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-1-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-1-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-1-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-1-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-1-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-1-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-2-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-2-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-2-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-2-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-2-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-2-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-2-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-2-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-2-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-2-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-2-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-2-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-2-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-2-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-2-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-2-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-2-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-2-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-2-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-2-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-3-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-3-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-3-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-3-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-3-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-3-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-3-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-3-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-3-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-3-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-3-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-3-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-3-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-3-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-3-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-3-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-3-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-3-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-3-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-3-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-4-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-4-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-4-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-4-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-4-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-4-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-4-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-4-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-4-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-4-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-4-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-4-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-4-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-4-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-4-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-4-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-4-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-4-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-4-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-4-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-5-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-5-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-5-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-5-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-5-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-5-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-5-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-5-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-5-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-5-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-5-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-5-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-5-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-5-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-5-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-5-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-5-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-5-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-5-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-5-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-6-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-6-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-6-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-6-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-6-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-6-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-6-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-6-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-6-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-6-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-6-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-6-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-6-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-6-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-6-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-6-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-6-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-6-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-6-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-6-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-7-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-7-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-7-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-7-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-7-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-7-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-7-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-7-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-7-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-7-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-7-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-7-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-7-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-7-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-7-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-7-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-7-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-7-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-0-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-0-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-0-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-0-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-0-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-0-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-0-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-0-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-0-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-0-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-0-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-0-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-0-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-0-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-0-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-0-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-0-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-0-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-1-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-1-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-1-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-1-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-1-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-1-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-1-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-1-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-1-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-1-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-1-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-1-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-1-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-1-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-1-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-1-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-1-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-1-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-1-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-1-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-2-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-2-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-2-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-2-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-2-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-2-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-2-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-2-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-2-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-2-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-2-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-2-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-2-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-2-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-2-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-2-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-2-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-2-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-2-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-2-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-3-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-3-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-3-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-3-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-3-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-3-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-3-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-3-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-3-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-3-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-3-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-3-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-3-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-3-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-3-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-3-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-3-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-3-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-3-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-3-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-4-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-4-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-4-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-4-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-4-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-4-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-4-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-4-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-4-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-4-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-4-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-4-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-4-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-4-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-4-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-4-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-4-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-4-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-4-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-4-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-5-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-5-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-5-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-5-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-5-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-5-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-5-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-5-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-5-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-5-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-5-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-5-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-5-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-5-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-5-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-5-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-5-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-5-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-5-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-5-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-6-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-6-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-6-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-6-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-6-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-6-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-6-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-6-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-6-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-6-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-6-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-6-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-6-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-6-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-6-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-6-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-6-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-6-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-6-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-6-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-7-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-7-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-7-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-7-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-7-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-7-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-7-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-7-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-7-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-7-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-7-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-7-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-7-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-7-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-7-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-7-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-7-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-7-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-0-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-0-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-0-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-0-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-0-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-0-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-0-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-0-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-0-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-0-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-0-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-0-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-0-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-0-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-0-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-0-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-0-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-0-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-1-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-1-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-1-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-1-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-1-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-1-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-1-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-1-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-1-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-1-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-1-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-1-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-1-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-1-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-1-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-1-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-1-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-1-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-1-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-1-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-2-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-2-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-2-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-2-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-2-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-2-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-2-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-2-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-2-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-2-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-2-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-2-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-2-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-2-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-2-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-2-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-2-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-2-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-2-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-2-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-3-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-3-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-3-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-3-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-3-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-3-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-3-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-3-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-3-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-3-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-3-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-3-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-3-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-3-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-3-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-3-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-3-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-3-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-3-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-3-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-4-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-4-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-4-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-4-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-4-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-4-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-4-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-4-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-4-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-4-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-4-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-4-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-4-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-4-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-4-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-4-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-4-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-4-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-4-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-4-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-5-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-5-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-5-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-5-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-5-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-5-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-5-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-5-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-5-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-5-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-5-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-5-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-5-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-5-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-5-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-5-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-5-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-5-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-5-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-5-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-6-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-6-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-6-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-6-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-6-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-6-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-6-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-6-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-6-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-6-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-6-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-6-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-6-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-6-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-6-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-6-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-6-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-6-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-6-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-6-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-7-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-7-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-7-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-7-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-7-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-7-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-7-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-7-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-7-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-7-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-7-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-7-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-7-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-7-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-7-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-7-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-7-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-7-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-0-1/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-0-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-0-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-0-2/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-0-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-0-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-0-3/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-0-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-0-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-0-4/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-0-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-0-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-0-5/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-0-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-0-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-0-6/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-0-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-0-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-0-7/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-0-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-0-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-0-8/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-0-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-0-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-0-9/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-0-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-0-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-1-0/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-1-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-1-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-1-1/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-1-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-1-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-1-2/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-1-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-1-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-1-3/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-1-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-1-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-1-4/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-1-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-1-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-1-5/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-1-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-1-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-1-6/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-1-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-1-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-1-7/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-1-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-1-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-1-8/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-1-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-1-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-1-9/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-1-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-1-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-2-0/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-2-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-2-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-2-1/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-2-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-2-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-2-2/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-2-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-2-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-2-3/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-2-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-2-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-2-4/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-2-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-2-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-2-5/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-2-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-2-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-2-6/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-2-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-2-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-2-7/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-2-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-2-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-2-8/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-2-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-2-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-2-9/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-2-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-2-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-3-0/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-3-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-3-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-3-1/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-3-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-3-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-3-2/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-3-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-3-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-3-3/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-3-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-3-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-3-4/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-3-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-3-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-3-5/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-3-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-3-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-3-6/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-3-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-3-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-3-7/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-3-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-3-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-3-8/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-3-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-3-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-3-9/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-3-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-3-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-4-0/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-4-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-4-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-4-1/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-4-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-4-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-4-2/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-4-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-4-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-4-3/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-4-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-4-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-4-4/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-4-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-4-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-4-5/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-4-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-4-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-4-6/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-4-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-4-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-4-7/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-4-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-4-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-4-8/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-4-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-4-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-4-9/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-4-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-4-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-5-0/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-5-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-5-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-5-1/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-5-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-5-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-5-2/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-5-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-5-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-5-3/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-5-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-5-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-5-4/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-5-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-5-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-5-5/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-5-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-5-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-5-6/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-5-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-5-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-5-7/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-5-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-5-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-5-8/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-5-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-5-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-5-9/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-5-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-5-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-6-0/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-6-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-6-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-6-1/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-6-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-6-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-6-2/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-6-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-6-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-6-3/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-6-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-6-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-6-4/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-6-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-6-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-6-5/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-6-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-6-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-6-6/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-6-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-6-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-6-7/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-6-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-6-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-6-8/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-6-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-6-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-6-9/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-6-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-6-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-7-0/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-7-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-7-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-7-1/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-7-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-7-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-7-2/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-7-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-7-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-7-3/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-7-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-7-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-7-4/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-7-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-7-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-7-5/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-7-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-7-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-7-6/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-7-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-7-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-7-7/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-7-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-7-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-7-8/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-7-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-7-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-0-1/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-0-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-0-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-0-2/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-0-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-0-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-0-3/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-0-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-0-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-0-4/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-0-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-0-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-0-5/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-0-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-0-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-0-6/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-0-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-0-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-0-7/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-0-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-0-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-0-8/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-0-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-0-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-0-9/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-0-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-0-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-1-0/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-1-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-1-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-1-1/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-1-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-1-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-1-2/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-1-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-1-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-1-3/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-1-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-1-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-1-4/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-1-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-1-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-1-5/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-1-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-1-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-1-6/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-1-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-1-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-1-7/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-1-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-1-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-1-8/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-1-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-1-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-1-9/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-1-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-1-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-2-0/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-2-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-2-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-2-1/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-2-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-2-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-2-2/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-2-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-2-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-2-3/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-2-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-2-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-2-4/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-2-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-2-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-2-5/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-2-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-2-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-2-6/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-2-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-2-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-2-7/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-2-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-2-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-2-8/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-2-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-2-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-2-9/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-2-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-2-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-3-0/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-3-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-3-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-3-1/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-3-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-3-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-3-2/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-3-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-3-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-3-3/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-3-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-3-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-3-4/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-3-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-3-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-3-5/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-3-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-3-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-3-6/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-3-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-3-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-3-7/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-3-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-3-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-3-8/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-3-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-3-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-3-9/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-3-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-3-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-4-0/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-4-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-4-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-4-1/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-4-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-4-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-4-2/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-4-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-4-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-4-3/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-4-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-4-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-4-4/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-4-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-4-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-4-5/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-4-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-4-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-4-6/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-4-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-4-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-4-7/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-4-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-4-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-4-8/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-4-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-4-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-4-9/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-4-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-4-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-5-0/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-5-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-5-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-5-1/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-5-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-5-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-5-2/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-5-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-5-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-5-3/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-5-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-5-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-5-4/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-5-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-5-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-5-5/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-5-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-5-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-5-6/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-5-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-5-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-5-7/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-5-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-5-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-5-8/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-5-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-5-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-5-9/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-5-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-5-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-6-0/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-6-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-6-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-6-1/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-6-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-6-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-6-2/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-6-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-6-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-6-3/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-6-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-6-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-6-4/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-6-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-6-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-6-5/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-6-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-6-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-6-6/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-6-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-6-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-6-7/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-6-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-6-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-6-8/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-6-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-6-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-6-9/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-6-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-6-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-7-0/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-7-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-7-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-7-1/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-7-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-7-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-7-2/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-7-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-7-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-7-3/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-7-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-7-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-7-4/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-7-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-7-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-7-5/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-7-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-7-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-7-6/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-7-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-7-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-7-7/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-7-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-7-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-7-8/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-7-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-7-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-0-1/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-0-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-0-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-0-2/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-0-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-0-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-0-3/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-0-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-0-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-0-4/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-0-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-0-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-0-5/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-0-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-0-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-0-6/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-0-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-0-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-0-7/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-0-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-0-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-0-8/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-0-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-0-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-0-9/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-0-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-0-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-1-0/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-1-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-1-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-1-1/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-1-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-1-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-1-2/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-1-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-1-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-1-3/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-1-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-1-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-1-4/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-1-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-1-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-1-5/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-1-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-1-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-1-6/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-1-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-1-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-1-7/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-1-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-1-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-1-8/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-1-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-1-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-1-9/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-1-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-1-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-2-0/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-2-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-2-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-2-1/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-2-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-2-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-2-2/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-2-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-2-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-2-3/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-2-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-2-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-2-4/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-2-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-2-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-2-5/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-2-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-2-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-2-6/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-2-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-2-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-2-7/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-2-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-2-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-2-8/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-2-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-2-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-2-9/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-2-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-2-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-3-0/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-3-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-3-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-3-1/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-3-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-3-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-3-2/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-3-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-3-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-3-3/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-3-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-3-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-3-4/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-3-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-3-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-3-5/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-3-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-3-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-3-6/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-3-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-3-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-3-7/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-3-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-3-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-3-8/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-3-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-3-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-3-9/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-3-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-3-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-4-0/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-4-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-4-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-4-1/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-4-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-4-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-4-2/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-4-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-4-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-4-3/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-4-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-4-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-4-4/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-4-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-4-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-4-5/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-4-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-4-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-4-6/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-4-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-4-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-4-7/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-4-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-4-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-4-8/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-4-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-4-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-4-9/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-4-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-4-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-5-0/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-5-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-5-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-5-1/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-5-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-5-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-5-2/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-5-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-5-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-5-3/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-5-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-5-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-5-4/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-5-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-5-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-5-5/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-5-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-5-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-5-6/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-5-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-5-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-5-7/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-5-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-5-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-5-8/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-5-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-5-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-5-9/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-5-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-5-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-6-0/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-6-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-6-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-6-1/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-6-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-6-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-6-2/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-6-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-6-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-6-3/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-6-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-6-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-6-4/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-6-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-6-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-6-5/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-6-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-6-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-6-6/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-6-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-6-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-6-7/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-6-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-6-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-6-8/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-6-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-6-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-6-9/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-6-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-6-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-7-0/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-7-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-7-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-7-1/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-7-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-7-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-7-2/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-7-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-7-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-7-3/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-7-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-7-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-7-4/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-7-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-7-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-7-5/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-7-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-7-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-7-6/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-7-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-7-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-7-7/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-7-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-7-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-7-8/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL297_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-7-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL298_skin_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-7-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-0-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-0-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-0-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-0-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-0-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-0-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-0-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-0-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-0-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-0-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-0-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-0-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-0-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-0-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-0-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-0-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-0-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-0-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-1-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-1-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-1-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-1-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-1-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-1-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-1-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-1-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-1-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-1-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-1-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-1-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-1-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-1-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-1-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-1-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-1-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-1-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-1-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-1-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-2-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-2-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-2-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-2-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-2-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-2-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-2-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-2-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-2-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-2-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-2-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-2-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-2-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-2-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-2-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-2-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-2-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-2-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-2-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-2-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-3-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-3-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-3-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-3-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-3-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-3-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-3-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-3-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-3-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-3-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-3-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-3-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-3-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-3-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-3-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-3-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-3-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-3-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-3-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-3-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-4-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-4-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-4-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-4-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-4-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-4-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-4-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-4-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-4-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-4-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-4-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-4-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-4-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-4-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-4-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-4-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-4-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-4-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-4-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-4-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-5-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-5-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-5-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-5-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-5-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-5-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-5-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-5-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-5-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-5-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-5-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-5-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-5-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-5-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-5-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-5-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-5-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-5-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-5-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-5-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-6-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-6-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-6-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-6-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-6-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-6-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-6-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-6-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-6-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-6-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-6-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-6-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-6-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-6-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-6-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-6-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-6-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-6-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-6-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-6-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-7-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-7-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-7-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-7-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-7-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-7-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-7-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-7-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-7-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-7-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-7-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-7-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-7-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-7-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-7-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-7-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-7-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-7-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-0-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-0-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-0-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-0-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-0-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-0-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-0-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-0-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-0-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-0-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-0-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-0-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-0-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-0-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-0-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-0-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-0-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-0-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-1-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-1-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-1-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-1-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-1-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-1-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-1-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-1-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-1-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-1-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-1-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-1-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-1-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-1-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-1-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-1-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-1-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-1-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-1-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-1-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-2-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-2-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-2-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-2-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-2-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-2-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-2-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-2-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-2-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-2-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-2-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-2-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-2-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-2-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-2-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-2-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-2-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-2-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-2-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-2-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-3-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-3-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-3-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-3-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-3-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-3-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-3-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-3-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-3-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-3-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-3-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-3-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-3-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-3-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-3-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-3-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-3-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-3-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-3-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-3-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-4-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-4-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-4-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-4-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-4-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-4-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-4-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-4-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-4-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-4-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-4-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-4-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-4-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-4-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-4-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-4-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-4-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-4-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-4-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-4-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-5-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-5-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-5-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-5-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-5-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-5-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-5-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-5-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-5-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-5-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-5-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-5-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-5-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-5-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-5-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-5-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-5-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-5-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-5-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-5-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-6-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-6-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-6-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-6-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-6-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-6-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-6-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-6-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-6-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-6-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-6-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-6-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-6-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-6-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-6-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-6-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-6-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-6-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-6-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-6-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-7-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-7-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-7-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-7-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-7-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-7-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-7-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-7-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-7-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-7-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-7-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-7-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-7-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-7-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-7-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-7-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-7-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-7-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-0-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-0-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-0-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-0-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-0-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-0-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-0-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-0-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-0-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-0-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-0-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-0-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-0-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-0-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-0-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-0-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-0-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-0-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-1-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-1-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-1-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-1-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-1-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-1-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-1-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-1-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-1-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-1-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-1-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-1-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-1-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-1-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-1-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-1-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-1-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-1-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-1-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-1-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-2-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-2-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-2-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-2-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-2-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-2-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-2-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-2-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-2-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-2-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-2-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-2-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-2-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-2-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-2-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-2-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-2-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-2-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-2-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-2-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-3-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-3-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-3-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-3-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-3-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-3-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-3-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-3-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-3-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-3-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-3-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-3-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-3-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-3-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-3-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-3-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-3-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-3-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-3-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-3-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-4-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-4-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-4-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-4-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-4-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-4-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-4-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-4-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-4-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-4-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-4-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-4-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-4-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-4-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-4-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-4-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-4-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-4-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-4-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-4-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-5-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-5-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-5-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-5-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-5-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-5-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-5-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-5-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-5-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-5-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-5-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-5-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-5-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-5-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-5-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-5-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-5-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-5-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-5-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-5-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-6-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-6-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-6-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-6-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-6-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-6-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-6-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-6-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-6-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-6-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-6-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-6-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-6-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-6-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-6-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-6-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-6-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-6-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-6-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-6-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-7-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-7-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-7-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-7-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-7-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-7-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-7-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-7-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-7-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-7-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-7-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-7-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-7-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-7-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-7-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-7-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-7-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-7-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-0-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-0-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-0-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-0-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-0-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-0-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-0-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-0-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-0-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-0-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-0-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-0-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-0-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-0-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-0-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-0-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-0-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-0-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-1-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-1-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-1-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-1-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-1-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-1-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-1-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-1-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-1-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-1-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-1-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-1-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-1-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-1-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-1-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-1-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-1-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-1-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-1-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-1-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-2-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-2-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-2-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-2-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-2-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-2-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-2-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-2-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-2-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-2-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-2-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-2-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-2-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-2-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-2-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-2-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-2-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-2-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-2-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-2-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-3-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-3-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-3-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-3-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-3-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-3-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-3-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-3-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-3-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-3-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-3-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-3-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-3-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-3-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-3-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-3-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-3-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-3-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-3-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-3-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-4-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-4-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-4-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-4-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-4-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-4-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-4-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-4-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-4-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-4-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-4-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-4-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-4-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-4-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-4-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-4-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-4-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-4-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-4-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-4-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-5-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-5-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-5-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-5-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-5-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-5-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-5-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-5-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-5-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-5-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-5-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-5-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-5-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-5-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-5-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-5-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-5-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-5-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-5-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-5-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-6-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-6-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-6-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-6-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-6-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-6-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-6-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-6-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-6-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-6-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-6-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-6-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-6-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-6-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-6-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-6-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-6-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-6-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-6-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-6-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-7-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-7-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-7-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-7-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-7-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-7-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-7-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-7-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-7-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-7-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-7-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-7-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-7-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-7-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-7-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-7-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-7-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-7-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-0-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-0-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-0-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-0-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-0-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-0-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-0-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-0-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-0-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-0-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-0-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-0-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-0-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-0-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-0-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-0-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-0-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-0-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-1-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-1-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-1-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-1-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-1-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-1-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-1-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-1-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-1-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-1-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-1-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-1-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-1-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-1-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-1-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-1-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-1-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-1-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-1-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-1-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-2-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-2-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-2-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-2-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-2-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-2-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-2-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-2-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-2-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-2-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-2-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-2-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-2-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-2-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-2-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-2-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-2-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-2-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-2-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-2-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-3-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-3-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-3-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-3-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-3-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-3-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-3-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-3-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-3-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-3-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-3-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-3-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-3-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-3-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-3-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-3-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-3-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-3-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-3-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-3-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-4-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-4-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-4-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-4-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-4-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-4-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-4-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-4-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-4-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-4-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-4-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-4-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-4-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-4-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-4-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-4-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-4-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-4-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-4-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-4-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-5-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-5-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-5-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-5-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-5-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-5-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-5-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-5-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-5-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-5-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-5-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-5-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-5-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-5-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-5-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-5-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-5-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-5-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-5-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-5-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-6-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-6-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-6-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-6-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-6-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-6-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-6-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-6-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-6-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-6-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-6-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-6-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-6-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-6-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-6-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-6-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-6-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-6-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-6-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-6-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-7-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-7-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-7-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-7-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-7-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-7-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-7-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-7-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-7-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-7-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-7-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-7-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-7-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-7-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-7-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-7-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-7-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-7-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-0-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-0-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-0-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-0-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-0-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-0-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-0-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-0-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-0-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-0-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-0-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-0-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-0-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-0-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-0-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-0-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-0-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-0-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-1-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-1-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-1-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-1-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-1-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-1-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-1-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-1-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-1-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-1-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-1-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-1-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-1-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-1-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-1-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-1-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-1-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-1-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-1-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-1-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-2-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-2-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-2-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-2-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-2-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-2-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-2-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-2-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-2-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-2-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-2-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-2-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-2-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-2-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-2-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-2-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-2-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-2-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-2-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-2-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-3-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-3-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-3-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-3-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-3-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-3-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-3-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-3-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-3-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-3-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-3-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-3-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-3-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-3-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-3-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-3-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-3-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-3-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-3-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-3-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-4-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-4-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-4-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-4-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-4-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-4-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-4-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-4-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-4-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-4-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-4-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-4-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-4-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-4-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-4-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-4-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-4-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-4-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-4-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-4-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-5-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-5-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-5-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-5-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-5-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-5-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-5-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-5-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-5-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-5-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-5-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-5-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-5-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-5-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-5-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-5-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-5-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-5-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-5-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-5-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-6-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-6-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-6-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-6-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-6-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-6-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-6-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-6-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-6-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-6-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-6-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-6-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-6-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-6-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-6-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-6-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-6-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-6-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-6-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-6-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-7-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-7-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-7-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-7-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-7-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-7-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-7-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-7-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-7-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-7-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-7-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-7-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-7-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-7-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-7-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-7-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-7-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-7-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-0-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-0-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-0-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-0-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-0-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-0-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-0-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-0-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-0-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-0-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-0-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-0-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-0-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-0-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-0-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-0-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-0-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-0-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-1-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-1-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-1-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-1-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-1-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-1-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-1-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-1-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-1-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-1-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-1-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-1-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-1-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-1-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-1-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-1-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-1-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-1-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-1-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-1-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-2-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-2-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-2-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-2-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-2-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-2-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-2-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-2-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-2-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-2-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-2-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-2-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-2-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-2-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-2-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-2-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-2-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-2-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-2-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-2-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-3-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-3-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-3-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-3-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-3-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-3-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-3-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-3-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-3-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-3-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-3-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-3-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-3-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-3-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-3-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-3-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-3-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-3-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-3-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-3-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-4-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-4-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-4-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-4-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-4-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-4-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-4-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-4-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-4-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-4-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-4-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-4-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-4-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-4-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-4-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-4-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-4-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-4-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-4-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-4-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-5-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-5-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-5-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-5-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-5-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-5-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-5-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-5-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-5-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-5-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-5-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-5-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-5-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-5-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-5-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-5-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-5-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-5-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-5-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-5-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-6-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-6-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-6-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-6-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-6-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-6-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-6-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-6-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-6-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-6-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-6-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-6-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-6-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-6-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-6-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-6-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-6-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-6-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-6-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-6-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-7-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-7-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-7-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-7-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-7-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-7-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-7-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-7-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-7-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-7-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-7-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-7-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-7-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-7-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-7-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-7-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-7-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-7-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-0-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-0-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-0-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-0-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-0-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-0-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-0-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-0-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-0-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-0-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-0-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-0-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-0-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-0-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-0-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-0-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-0-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-0-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-1-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-1-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-1-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-1-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-1-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-1-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-1-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-1-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-1-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-1-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-1-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-1-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-1-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-1-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-1-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-1-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-1-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-1-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-1-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-1-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-2-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-2-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-2-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-2-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-2-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-2-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-2-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-2-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-2-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-2-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-2-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-2-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-2-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-2-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-2-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-2-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-2-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-2-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-2-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-2-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-3-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-3-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-3-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-3-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-3-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-3-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-3-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-3-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-3-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-3-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-3-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-3-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-3-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-3-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-3-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-3-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-3-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-3-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-3-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-3-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-4-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-4-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-4-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-4-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-4-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-4-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-4-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-4-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-4-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-4-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-4-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-4-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-4-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-4-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-4-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-4-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-4-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-4-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-4-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-4-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-5-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-5-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-5-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-5-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-5-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-5-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-5-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-5-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-5-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-5-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-5-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-5-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-5-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-5-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-5-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-5-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-5-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-5-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-5-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-5-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-6-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-6-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-6-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-6-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-6-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-6-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-6-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-6-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-6-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-6-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-6-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-6-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-6-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-6-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-6-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-6-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-6-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-6-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-6-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-6-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-7-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-7-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-7-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-7-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-7-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-7-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-7-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-7-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-7-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-7-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-7-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-7-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-7-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-7-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-7-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-7-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-7-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-7-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-0-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-0-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-0-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-0-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-0-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-0-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-0-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-0-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-0-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-0-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-0-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-0-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-0-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-0-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-0-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-0-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-0-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-0-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-1-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-1-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-1-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-1-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-1-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-1-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-1-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-1-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-1-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-1-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-1-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-1-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-1-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-1-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-1-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-1-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-1-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-1-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-1-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-1-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-2-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-2-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-2-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-2-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-2-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-2-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-2-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-2-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-2-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-2-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-2-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-2-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-2-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-2-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-2-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-2-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-2-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-2-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-2-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-2-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-3-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-3-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-3-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-3-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-3-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-3-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-3-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-3-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-3-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-3-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-3-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-3-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-3-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-3-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-3-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-3-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-3-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-3-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-3-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-3-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-4-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-4-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-4-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-4-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-4-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-4-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-4-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-4-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-4-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-4-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-4-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-4-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-4-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-4-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-4-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-4-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-4-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-4-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-4-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-4-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-5-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-5-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-5-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-5-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-5-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-5-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-5-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-5-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-5-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-5-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-5-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-5-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-5-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-5-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-5-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-5-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-5-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-5-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-5-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-5-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-6-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-6-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-6-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-6-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-6-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-6-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-6-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-6-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-6-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-6-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-6-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-6-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-6-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-6-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-6-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-6-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-6-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-6-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-6-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-6-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-7-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-7-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-7-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-7-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-7-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-7-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-7-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-7-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-7-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-7-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-7-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-7-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-7-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-7-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-7-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-7-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-7-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-7-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-0-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-0-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-0-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-0-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-0-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-0-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-0-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-0-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-0-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-0-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-0-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-0-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-0-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-0-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-0-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-0-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-0-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-0-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-1-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-1-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-1-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-1-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-1-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-1-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-1-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-1-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-1-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-1-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-1-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-1-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-1-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-1-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-1-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-1-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-1-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-1-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-1-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-1-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-2-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-2-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-2-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-2-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-2-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-2-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-2-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-2-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-2-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-2-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-2-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-2-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-2-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-2-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-2-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-2-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-2-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-2-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-2-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-2-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-3-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-3-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-3-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-3-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-3-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-3-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-3-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-3-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-3-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-3-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-3-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-3-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-3-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-3-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-3-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-3-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-3-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-3-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-3-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-3-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-4-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-4-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-4-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-4-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-4-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-4-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-4-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-4-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-4-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-4-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-4-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-4-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-4-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-4-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-4-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-4-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-4-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-4-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-4-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-4-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-5-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-5-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-5-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-5-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-5-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-5-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-5-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-5-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-5-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-5-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-5-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-5-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-5-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-5-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-5-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-5-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-5-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-5-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-5-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-5-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-6-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-6-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-6-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-6-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-6-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-6-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-6-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-6-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-6-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-6-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-6-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-6-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-6-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-6-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-6-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-6-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-6-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-6-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-6-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-6-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-7-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-7-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-7-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-7-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-7-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-7-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-7-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-7-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-7-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-7-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-7-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-7-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-7-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-7-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-7-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-7-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-7-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-7-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-0-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-0-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-0-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-0-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-0-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-0-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-0-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-0-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-0-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-0-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-0-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-0-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-0-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-0-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-0-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-0-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-0-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-0-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-1-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-1-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-1-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-1-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-1-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-1-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-1-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-1-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-1-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-1-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-1-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-1-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-1-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-1-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-1-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-1-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-1-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-1-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-1-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-1-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-2-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-2-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-2-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-2-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-2-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-2-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-2-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-2-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-2-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-2-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-2-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-2-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-2-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-2-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-2-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-2-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-2-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-2-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-2-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-2-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-3-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-3-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-3-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-3-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-3-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-3-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-3-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-3-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-3-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-3-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-3-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-3-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-3-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-3-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-3-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-3-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-3-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-3-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-3-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-3-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-4-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-4-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-4-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-4-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-4-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-4-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-4-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-4-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-4-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-4-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-4-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-4-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-4-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-4-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-4-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-4-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-4-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-4-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-4-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-4-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-5-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-5-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-5-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-5-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-5-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-5-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-5-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-5-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-5-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-5-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-5-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-5-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-5-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-5-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-5-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-5-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-5-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-5-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-5-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-5-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-6-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-6-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-6-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-6-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-6-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-6-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-6-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-6-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-6-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-6-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-6-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-6-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-6-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-6-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-6-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-6-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-6-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-6-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-6-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-6-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-7-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-7-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-7-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-7-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-7-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-7-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-7-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-7-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-7-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-7-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-7-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-7-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-7-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-7-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-7-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-7-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-7-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-7-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-0-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-0-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-0-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-0-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-0-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-0-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-0-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-0-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-0-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-0-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-0-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-0-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-0-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-0-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-0-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-0-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-0-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-0-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-1-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-1-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-1-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-1-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-1-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-1-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-1-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-1-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-1-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-1-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-1-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-1-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-1-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-1-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-1-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-1-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-1-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-1-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-1-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-1-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-2-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-2-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-2-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-2-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-2-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-2-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-2-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-2-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-2-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-2-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-2-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-2-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-2-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-2-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-2-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-2-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-2-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-2-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-2-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-2-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-3-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-3-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-3-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-3-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-3-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-3-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-3-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-3-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-3-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-3-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-3-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-3-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-3-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-3-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-3-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-3-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-3-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-3-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-3-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-3-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-4-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-4-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-4-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-4-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-4-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-4-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-4-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-4-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-4-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-4-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-4-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-4-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-4-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-4-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-4-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-4-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-4-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-4-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-4-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-4-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-5-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-5-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-5-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-5-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-5-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-5-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-5-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-5-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-5-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-5-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-5-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-5-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-5-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-5-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-5-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-5-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-5-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-5-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-5-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-5-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-6-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-6-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-6-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-6-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-6-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-6-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-6-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-6-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-6-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-6-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-6-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-6-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-6-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-6-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-6-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-6-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-6-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-6-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-6-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-6-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-7-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-7-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-7-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-7-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-7-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-7-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-7-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-7-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-7-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-7-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-7-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-7-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-7-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-7-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-7-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-7-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-7-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-7-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-0-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-0-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-0-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-0-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-0-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-0-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-0-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-0-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-0-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-0-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-0-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-0-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-0-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-0-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-0-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-0-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-0-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-0-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-1-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-1-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-1-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-1-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-1-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-1-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-1-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-1-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-1-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-1-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-1-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-1-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-1-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-1-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-1-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-1-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-1-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-1-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-1-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-1-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-2-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-2-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-2-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-2-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-2-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-2-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-2-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-2-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-2-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-2-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-2-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-2-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-2-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-2-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-2-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-2-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-2-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-2-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-2-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-2-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-3-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-3-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-3-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-3-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-3-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-3-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-3-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-3-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-3-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-3-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-3-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-3-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-3-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-3-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-3-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-3-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-3-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-3-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-3-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-3-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-4-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-4-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-4-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-4-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-4-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-4-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-4-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-4-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-4-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-4-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-4-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-4-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-4-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-4-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-4-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-4-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-4-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-4-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-4-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-4-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-5-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-5-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-5-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-5-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-5-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-5-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-5-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-5-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-5-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-5-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-5-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-5-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-5-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-5-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-5-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-5-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-5-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-5-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-5-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-5-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-6-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-6-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-6-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-6-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-6-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-6-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-6-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-6-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-6-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-6-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-6-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-6-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-6-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-6-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-6-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-6-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-6-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-6-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-6-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-6-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-7-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-7-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-7-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-7-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-7-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-7-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-7-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-7-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-7-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-7-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-7-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-7-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-7-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-7-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-7-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-7-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-7-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-7-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-0-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-0-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-0-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-0-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-0-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-0-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-0-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-0-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-0-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-0-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-0-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-0-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-0-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-0-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-0-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-0-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-0-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-0-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-1-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-1-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-1-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-1-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-1-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-1-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-1-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-1-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-1-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-1-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-1-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-1-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-1-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-1-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-1-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-1-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-1-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-1-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-1-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-1-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-2-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-2-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-2-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-2-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-2-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-2-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-2-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-2-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-2-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-2-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-2-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-2-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-2-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-2-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-2-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-2-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-2-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-2-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-2-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-2-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-3-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-3-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-3-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-3-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-3-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-3-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-3-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-3-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-3-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-3-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-3-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-3-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-3-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-3-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-3-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-3-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-3-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-3-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-3-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-3-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-4-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-4-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-4-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-4-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-4-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-4-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-4-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-4-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-4-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-4-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-4-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-4-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-4-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-4-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-4-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-4-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-4-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-4-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-4-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-4-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-5-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-5-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-5-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-5-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-5-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-5-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-5-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-5-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-5-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-5-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-5-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-5-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-5-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-5-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-5-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-5-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-5-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-5-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-5-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-5-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-6-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-6-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-6-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-6-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-6-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-6-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-6-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-6-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-6-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-6-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-6-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-6-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-6-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-6-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-6-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-6-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-6-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-6-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-6-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-6-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-7-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-7-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-7-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-7-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-7-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-7-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-7-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-7-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-7-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-7-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-7-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-7-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-7-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-7-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-7-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-7-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-7-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-7-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-0-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-0-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-0-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-0-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-0-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-0-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-0-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-0-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-0-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-0-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-0-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-0-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-0-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-0-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-0-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-0-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-0-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-0-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-1-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-1-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-1-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-1-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-1-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-1-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-1-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-1-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-1-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-1-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-1-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-1-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-1-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-1-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-1-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-1-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-1-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-1-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-1-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-1-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-2-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-2-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-2-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-2-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-2-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-2-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-2-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-2-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-2-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-2-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-2-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-2-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-2-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-2-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-2-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-2-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-2-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-2-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-2-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-2-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-3-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-3-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-3-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-3-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-3-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-3-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-3-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-3-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-3-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-3-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-3-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-3-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-3-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-3-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-3-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-3-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-3-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-3-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-3-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-3-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-4-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-4-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-4-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-4-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-4-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-4-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-4-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-4-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-4-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-4-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-4-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-4-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-4-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-4-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-4-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-4-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-4-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-4-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-4-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-4-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-5-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-5-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-5-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-5-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-5-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-5-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-5-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-5-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-5-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-5-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-5-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-5-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-5-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-5-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-5-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-5-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-5-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-5-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-5-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-5-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-6-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-6-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-6-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-6-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-6-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-6-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-6-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-6-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-6-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-6-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-6-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-6-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-6-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-6-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-6-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-6-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-6-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-6-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-6-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-6-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-7-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-7-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-7-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-7-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-7-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-7-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-7-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-7-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-7-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-7-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-7-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-7-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-7-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-7-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-7-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-7-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-7-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-7-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-0-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-0-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-0-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-0-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-0-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-0-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-0-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-0-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-0-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-0-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-0-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-0-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-0-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-0-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-0-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-0-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-0-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-0-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-1-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-1-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-1-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-1-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-1-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-1-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-1-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-1-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-1-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-1-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-1-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-1-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-1-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-1-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-1-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-1-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-1-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-1-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-1-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-1-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-2-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-2-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-2-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-2-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-2-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-2-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-2-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-2-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-2-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-2-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-2-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-2-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-2-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-2-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-2-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-2-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-2-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-2-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-2-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-2-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-3-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-3-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-3-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-3-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-3-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-3-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-3-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-3-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-3-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-3-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-3-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-3-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-3-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-3-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-3-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-3-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-3-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-3-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-3-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-3-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-4-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-4-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-4-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-4-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-4-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-4-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-4-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-4-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-4-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-4-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-4-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-4-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-4-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-4-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-4-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-4-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-4-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-4-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-4-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-4-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-5-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-5-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-5-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-5-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-5-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-5-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-5-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-5-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-5-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-5-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-5-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-5-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-5-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-5-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-5-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-5-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-5-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-5-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-5-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-5-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-6-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-6-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-6-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-6-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-6-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-6-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-6-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-6-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-6-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-6-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-6-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-6-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-6-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-6-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-6-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-6-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-6-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-6-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-6-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-6-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-7-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-7-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-7-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-7-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-7-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-7-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-7-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-7-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-7-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-7-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-7-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-7-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-7-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-7-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-7-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-7-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-7-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-7-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-0-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-0-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-0-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-0-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-0-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-0-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-0-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-0-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-0-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-0-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-0-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-0-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-0-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-0-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-0-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-0-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-0-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-0-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-1-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-1-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-1-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-1-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-1-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-1-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-1-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-1-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-1-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-1-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-1-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-1-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-1-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-1-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-1-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-1-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-1-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-1-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-1-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-1-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-2-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-2-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-2-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-2-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-2-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-2-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-2-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-2-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-2-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-2-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-2-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-2-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-2-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-2-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-2-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-2-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-2-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-2-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-2-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-2-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-3-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-3-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-3-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-3-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-3-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-3-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-3-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-3-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-3-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-3-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-3-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-3-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-3-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-3-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-3-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-3-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-3-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-3-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-3-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-3-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-4-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-4-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-4-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-4-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-4-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-4-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-4-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-4-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-4-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-4-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-4-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-4-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-4-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-4-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-4-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-4-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-4-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-4-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-4-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-4-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-5-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-5-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-5-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-5-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-5-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-5-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-5-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-5-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-5-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-5-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-5-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-5-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-5-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-5-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-5-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-5-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-5-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-5-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-5-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-5-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-6-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-6-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-6-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-6-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-6-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-6-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-6-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-6-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-6-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-6-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-6-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-6-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-6-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-6-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-6-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-6-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-6-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-6-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-6-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-6-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-7-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-7-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-7-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-7-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-7-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-7-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-7-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-7-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-7-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-7-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-7-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-7-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-7-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-7-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-7-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-7-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-7-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-7-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-0-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-0-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-0-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-0-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-0-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-0-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-0-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-0-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-0-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-0-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-0-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-0-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-0-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-0-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-0-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-0-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-0-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-0-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-1-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-1-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-1-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-1-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-1-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-1-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-1-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-1-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-1-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-1-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-1-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-1-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-1-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-1-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-1-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-1-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-1-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-1-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-1-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-1-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-2-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-2-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-2-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-2-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-2-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-2-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-2-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-2-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-2-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-2-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-2-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-2-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-2-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-2-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-2-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-2-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-2-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-2-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-2-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-2-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-3-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-3-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-3-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-3-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-3-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-3-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-3-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-3-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-3-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-3-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-3-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-3-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-3-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-3-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-3-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-3-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-3-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-3-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-3-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-3-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-4-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-4-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-4-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-4-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-4-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-4-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-4-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-4-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-4-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-4-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-4-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-4-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-4-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-4-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-4-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-4-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-4-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-4-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-4-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-4-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-5-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-5-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-5-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-5-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-5-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-5-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-5-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-5-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-5-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-5-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-5-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-5-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-5-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-5-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-5-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-5-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-5-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-5-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-5-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-5-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-6-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-6-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-6-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-6-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-6-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-6-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-6-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-6-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-6-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-6-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-6-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-6-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-6-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-6-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-6-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-6-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-6-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-6-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-6-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-6-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-7-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-7-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-7-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-7-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-7-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-7-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-7-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-7-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-7-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-7-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-7-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-7-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-7-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-7-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-7-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-7-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-7-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-7-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-0-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-0-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-0-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-0-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-0-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-0-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-0-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-0-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-0-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-0-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-0-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-0-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-0-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-0-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-0-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-0-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-0-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-0-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-1-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-1-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-1-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-1-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-1-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-1-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-1-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-1-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-1-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-1-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-1-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-1-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-1-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-1-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-1-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-1-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-1-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-1-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-1-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-1-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-2-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-2-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-2-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-2-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-2-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-2-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-2-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-2-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-2-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-2-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-2-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-2-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-2-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-2-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-2-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-2-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-2-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-2-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-2-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-2-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-3-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-3-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-3-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-3-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-3-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-3-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-3-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-3-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-3-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-3-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-3-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-3-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-3-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-3-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-3-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-3-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-3-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-3-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-3-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-3-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-4-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-4-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-4-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-4-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-4-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-4-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-4-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-4-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-4-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-4-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-4-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-4-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-4-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-4-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-4-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-4-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-4-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-4-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-4-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-4-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-5-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-5-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-5-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-5-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-5-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-5-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-5-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-5-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-5-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-5-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-5-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-5-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-5-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-5-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-5-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-5-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-5-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-5-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-5-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-5-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-6-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-6-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-6-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-6-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-6-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-6-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-6-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-6-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-6-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-6-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-6-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-6-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-6-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-6-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-6-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-6-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-6-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-6-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-6-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-6-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-7-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-7-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-7-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-7-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-7-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-7-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-7-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-7-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-7-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-7-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-7-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-7-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-7-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-7-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-7-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-7-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-7-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-7-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-0-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-0-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-0-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-0-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-0-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-0-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-0-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-0-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-0-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-0-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-0-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-0-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-0-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-0-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-0-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-0-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-0-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-0-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-1-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-1-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-1-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-1-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-1-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-1-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-1-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-1-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-1-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-1-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-1-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-1-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-1-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-1-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-1-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-1-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-1-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-1-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-1-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-1-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-2-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-2-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-2-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-2-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-2-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-2-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-2-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-2-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-2-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-2-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-2-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-2-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-2-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-2-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-2-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-2-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-2-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-2-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-2-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-2-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-3-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-3-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-3-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-3-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-3-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-3-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-3-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-3-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-3-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-3-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-3-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-3-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-3-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-3-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-3-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-3-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-3-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-3-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-3-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-3-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-4-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-4-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-4-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-4-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-4-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-4-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-4-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-4-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-4-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-4-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-4-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-4-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-4-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-4-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-4-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-4-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-4-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-4-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-4-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-4-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-5-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-5-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-5-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-5-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-5-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-5-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-5-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-5-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-5-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-5-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-5-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-5-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-5-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-5-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-5-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-5-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-5-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-5-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-5-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-5-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-6-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-6-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-6-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-6-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-6-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-6-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-6-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-6-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-6-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-6-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-6-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-6-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-6-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-6-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-6-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-6-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-6-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-6-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-6-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-6-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-7-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-7-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-7-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-7-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-7-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-7-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-7-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-7-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-7-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-7-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-7-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-7-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-7-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-7-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-7-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-7-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-7-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-7-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-0-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-0-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-0-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-0-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-0-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-0-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-0-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-0-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-0-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-0-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-0-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-0-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-0-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-0-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-0-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-0-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-0-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-0-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-1-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-1-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-1-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-1-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-1-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-1-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-1-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-1-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-1-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-1-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-1-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-1-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-1-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-1-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-1-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-1-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-1-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-1-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-1-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-1-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-2-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-2-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-2-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-2-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-2-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-2-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-2-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-2-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-2-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-2-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-2-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-2-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-2-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-2-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-2-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-2-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-2-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-2-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-2-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-2-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-3-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-3-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-3-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-3-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-3-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-3-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-3-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-3-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-3-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-3-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-3-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-3-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-3-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-3-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-3-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-3-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-3-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-3-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-3-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-3-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-4-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-4-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-4-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-4-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-4-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-4-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-4-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-4-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-4-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-4-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-4-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-4-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-4-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-4-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-4-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-4-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-4-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-4-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-4-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-4-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-5-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-5-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-5-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-5-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-5-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-5-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-5-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-5-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-5-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-5-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-5-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-5-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-5-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-5-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-5-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-5-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-5-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-5-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-5-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-5-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-6-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-6-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-6-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-6-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-6-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-6-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-6-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-6-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-6-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-6-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-6-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-6-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-6-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-6-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-6-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-6-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-6-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-6-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-6-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-6-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-7-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-7-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-7-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-7-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-7-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-7-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-7-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-7-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-7-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-7-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-7-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-7-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-7-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-7-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-7-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-7-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-7-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-7-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-0-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-0-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-0-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-0-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-0-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-0-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-0-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-0-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-0-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-0-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-0-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-0-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-0-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-0-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-0-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-0-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-0-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-0-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-1-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-1-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-1-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-1-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-1-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-1-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-1-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-1-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-1-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-1-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-1-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-1-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-1-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-1-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-1-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-1-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-1-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-1-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-1-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-1-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-2-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-2-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-2-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-2-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-2-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-2-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-2-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-2-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-2-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-2-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-2-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-2-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-2-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-2-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-2-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-2-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-2-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-2-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-2-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-2-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-3-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-3-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-3-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-3-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-3-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-3-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-3-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-3-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-3-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-3-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-3-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-3-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-3-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-3-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-3-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-3-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-3-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-3-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-3-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-3-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-4-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-4-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-4-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-4-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-4-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-4-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-4-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-4-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-4-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-4-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-4-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-4-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-4-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-4-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-4-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-4-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-4-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-4-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-4-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-4-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-5-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-5-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-5-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-5-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-5-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-5-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-5-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-5-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-5-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-5-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-5-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-5-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-5-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-5-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-5-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-5-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-5-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-5-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-5-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-5-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-6-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-6-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-6-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-6-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-6-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-6-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-6-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-6-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-6-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-6-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-6-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-6-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-6-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-6-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-6-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-6-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-6-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-6-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-6-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-6-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-7-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-7-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-7-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-7-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-7-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-7-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-7-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-7-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-7-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-7-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-7-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-7-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-7-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-7-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-7-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-7-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-7-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-7-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-0-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-0-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-0-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-0-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-0-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-0-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-0-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-0-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-0-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-0-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-0-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-0-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-0-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-0-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-0-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-0-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-0-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-0-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-1-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-1-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-1-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-1-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-1-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-1-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-1-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-1-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-1-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-1-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-1-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-1-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-1-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-1-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-1-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-1-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-1-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-1-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-1-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-1-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-2-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-2-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-2-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-2-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-2-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-2-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-2-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-2-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-2-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-2-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-2-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-2-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-2-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-2-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-2-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-2-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-2-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-2-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-2-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-2-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-3-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-3-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-3-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-3-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-3-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-3-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-3-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-3-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-3-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-3-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-3-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-3-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-3-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-3-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-3-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-3-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-3-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-3-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-3-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-3-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-4-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-4-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-4-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-4-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-4-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-4-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-4-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-4-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-4-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-4-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-4-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-4-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-4-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-4-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-4-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-4-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-4-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-4-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-4-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-4-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-5-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-5-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-5-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-5-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-5-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-5-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-5-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-5-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-5-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-5-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-5-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-5-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-5-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-5-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-5-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-5-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-5-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-5-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-5-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-5-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-6-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-6-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-6-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-6-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-6-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-6-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-6-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-6-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-6-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-6-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-6-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-6-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-6-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-6-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-6-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-6-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-6-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-6-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-6-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-6-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-7-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-7-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-7-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-7-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-7-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-7-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-7-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-7-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-7-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-7-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-7-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-7-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-7-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-7-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-7-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-7-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-7-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-7-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-0-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-0-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-0-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-0-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-0-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-0-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-0-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-0-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-0-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-0-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-0-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-0-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-0-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-0-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-0-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-0-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-0-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-0-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-1-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-1-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-1-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-1-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-1-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-1-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-1-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-1-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-1-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-1-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-1-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-1-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-1-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-1-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-1-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-1-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-1-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-1-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-1-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-1-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-2-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-2-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-2-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-2-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-2-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-2-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-2-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-2-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-2-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-2-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-2-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-2-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-2-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-2-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-2-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-2-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-2-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-2-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-2-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-2-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-3-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-3-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-3-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-3-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-3-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-3-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-3-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-3-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-3-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-3-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-3-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-3-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-3-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-3-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-3-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-3-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-3-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-3-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-3-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-3-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-4-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-4-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-4-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-4-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-4-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-4-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-4-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-4-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-4-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-4-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-4-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-4-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-4-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-4-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-4-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-4-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-4-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-4-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-4-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-4-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-5-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-5-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-5-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-5-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-5-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-5-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-5-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-5-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-5-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-5-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-5-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-5-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-5-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-5-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-5-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-5-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-5-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-5-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-5-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-5-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-6-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-6-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-6-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-6-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-6-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-6-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-6-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-6-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-6-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-6-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-6-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-6-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-6-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-6-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-6-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-6-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-6-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-6-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-6-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-6-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-7-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-7-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-7-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-7-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-7-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-7-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-7-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-7-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-7-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-7-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-7-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-7-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-7-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-7-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-7-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-7-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-7-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-7-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-0-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-0-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-0-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-0-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-0-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-0-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-0-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-0-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-0-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-0-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-0-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-0-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-0-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-0-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-0-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-0-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-0-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-0-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-1-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-1-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-1-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-1-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-1-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-1-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-1-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-1-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-1-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-1-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-1-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-1-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-1-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-1-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-1-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-1-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-1-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-1-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-1-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-1-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-2-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-2-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-2-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-2-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-2-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-2-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-2-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-2-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-2-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-2-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-2-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-2-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-2-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-2-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-2-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-2-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-2-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-2-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-2-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-2-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-3-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-3-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-3-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-3-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-3-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-3-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-3-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-3-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-3-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-3-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-3-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-3-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-3-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-3-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-3-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-3-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-3-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-3-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-3-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-3-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-4-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-4-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-4-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-4-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-4-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-4-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-4-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-4-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-4-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-4-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-4-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-4-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-4-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-4-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-4-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-4-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-4-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-4-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-4-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-4-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-5-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-5-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-5-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-5-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-5-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-5-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-5-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-5-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-5-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-5-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-5-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-5-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-5-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-5-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-5-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-5-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-5-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-5-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-5-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-5-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-6-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-6-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-6-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-6-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-6-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-6-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-6-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-6-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-6-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-6-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-6-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-6-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-6-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-6-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-6-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-6-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-6-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-6-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-6-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-6-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-7-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-7-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-7-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-7-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-7-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-7-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-7-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-7-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-7-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-7-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-7-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-7-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-7-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-7-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-7-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-7-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-7-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-7-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-0-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-0-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-0-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-0-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-0-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-0-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-0-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-0-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-0-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-0-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-0-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-0-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-0-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-0-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-0-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-0-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-0-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-0-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-1-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-1-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-1-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-1-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-1-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-1-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-1-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-1-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-1-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-1-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-1-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-1-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-1-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-1-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-1-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-1-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-1-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-1-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-1-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-1-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-2-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-2-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-2-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-2-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-2-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-2-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-2-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-2-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-2-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-2-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-2-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-2-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-2-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-2-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-2-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-2-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-2-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-2-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-2-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-2-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-3-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-3-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-3-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-3-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-3-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-3-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-3-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-3-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-3-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-3-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-3-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-3-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-3-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-3-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-3-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-3-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-3-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-3-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-3-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-3-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-4-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-4-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-4-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-4-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-4-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-4-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-4-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-4-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-4-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-4-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-4-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-4-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-4-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-4-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-4-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-4-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-4-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-4-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-4-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-4-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-5-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-5-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-5-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-5-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-5-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-5-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-5-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-5-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-5-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-5-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-5-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-5-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-5-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-5-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-5-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-5-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-5-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-5-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-5-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-5-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-6-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-6-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-6-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-6-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-6-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-6-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-6-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-6-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-6-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-6-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-6-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-6-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-6-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-6-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-6-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-6-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-6-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-6-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-6-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-6-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-7-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-7-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-7-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-7-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-7-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-7-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-7-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-7-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-7-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-7-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-7-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-7-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-7-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-7-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-7-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-7-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-7-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-7-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-0-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-0-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-0-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-0-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-0-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-0-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-0-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-0-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-0-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-0-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-0-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-0-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-0-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-0-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-0-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-0-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-0-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-0-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-1-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-1-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-1-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-1-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-1-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-1-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-1-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-1-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-1-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-1-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-1-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-1-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-1-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-1-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-1-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-1-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-1-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-1-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-1-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-1-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-2-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-2-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-2-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-2-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-2-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-2-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-2-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-2-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-2-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-2-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-2-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-2-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-2-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-2-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-2-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-2-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-2-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-2-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-2-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-2-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-3-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-3-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-3-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-3-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-3-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-3-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-3-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-3-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-3-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-3-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-3-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-3-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-3-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-3-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-3-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-3-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-3-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-3-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-3-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-3-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-4-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-4-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-4-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-4-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-4-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-4-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-4-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-4-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-4-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-4-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-4-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-4-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-4-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-4-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-4-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-4-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-4-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-4-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-4-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-4-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-5-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-5-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-5-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-5-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-5-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-5-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-5-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-5-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-5-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-5-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-5-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-5-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-5-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-5-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-5-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-5-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-5-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-5-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-5-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-5-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-6-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-6-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-6-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-6-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-6-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-6-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-6-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-6-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-6-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-6-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-6-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-6-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-6-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-6-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-6-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-6-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-6-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-6-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-6-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-6-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-7-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-7-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-7-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-7-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-7-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-7-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-7-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-7-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-7-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-7-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-7-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-7-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-7-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-7-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-7-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-7-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-7-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-7-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-0-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-0-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-0-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-0-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-0-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-0-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-0-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-0-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-0-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-0-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-0-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-0-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-0-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-0-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-0-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-0-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-0-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-0-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-1-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-1-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-1-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-1-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-1-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-1-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-1-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-1-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-1-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-1-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-1-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-1-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-1-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-1-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-1-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-1-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-1-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-1-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-1-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-1-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-2-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-2-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-2-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-2-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-2-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-2-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-2-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-2-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-2-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-2-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-2-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-2-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-2-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-2-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-2-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-2-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-2-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-2-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-2-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-2-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-3-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-3-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-3-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-3-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-3-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-3-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-3-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-3-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-3-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-3-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-3-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-3-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-3-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-3-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-3-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-3-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-3-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-3-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-3-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-3-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-4-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-4-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-4-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-4-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-4-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-4-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-4-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-4-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-4-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-4-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-4-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-4-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-4-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-4-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-4-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-4-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-4-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-4-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-4-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-4-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-5-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-5-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-5-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-5-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-5-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-5-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-5-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-5-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-5-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-5-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-5-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-5-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-5-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-5-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-5-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-5-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-5-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-5-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-5-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-5-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-6-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-6-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-6-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-6-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-6-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-6-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-6-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-6-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-6-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-6-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-6-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-6-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-6-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-6-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-6-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-6-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-6-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-6-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-6-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-6-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-7-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-7-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-7-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-7-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-7-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-7-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-7-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-7-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-7-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-7-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-7-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-7-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-7-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-7-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-7-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-7-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-7-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-7-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-0-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-0-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-0-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-0-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-0-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-0-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-0-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-0-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-0-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-0-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-0-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-0-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-0-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-0-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-0-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-0-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-0-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-0-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-1-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-1-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-1-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-1-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-1-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-1-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-1-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-1-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-1-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-1-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-1-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-1-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-1-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-1-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-1-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-1-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-1-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-1-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-1-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-1-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-2-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-2-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-2-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-2-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-2-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-2-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-2-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-2-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-2-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-2-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-2-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-2-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-2-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-2-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-2-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-2-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-2-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-2-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-2-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-2-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-3-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-3-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-3-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-3-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-3-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-3-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-3-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-3-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-3-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-3-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-3-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-3-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-3-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-3-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-3-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-3-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-3-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-3-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-3-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-3-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-4-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-4-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-4-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-4-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-4-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-4-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-4-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-4-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-4-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-4-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-4-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-4-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-4-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-4-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-4-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-4-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-4-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-4-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-4-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-4-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-5-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-5-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-5-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-5-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-5-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-5-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-5-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-5-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-5-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-5-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-5-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-5-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-5-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-5-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-5-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-5-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-5-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-5-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-5-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-5-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-6-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-6-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-6-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-6-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-6-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-6-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-6-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-6-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-6-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-6-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-6-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-6-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-6-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-6-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-6-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-6-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-6-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-6-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-6-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-6-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-7-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-7-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-7-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-7-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-7-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-7-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-7-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-7-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-7-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-7-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-7-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-7-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-7-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-7-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-7-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-7-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-7-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-7-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-0-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-0-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-0-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-0-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-0-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-0-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-0-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-0-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-0-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-0-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-0-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-0-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-0-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-0-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-0-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-0-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-0-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-0-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-1-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-1-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-1-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-1-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-1-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-1-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-1-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-1-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-1-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-1-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-1-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-1-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-1-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-1-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-1-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-1-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-1-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-1-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-1-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-1-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-2-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-2-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-2-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-2-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-2-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-2-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-2-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-2-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-2-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-2-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-2-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-2-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-2-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-2-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-2-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-2-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-2-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-2-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-2-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-2-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-3-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-3-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-3-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-3-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-3-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-3-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-3-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-3-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-3-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-3-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-3-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-3-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-3-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-3-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-3-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-3-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-3-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-3-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-3-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-3-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-4-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-4-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-4-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-4-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-4-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-4-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-4-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-4-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-4-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-4-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-4-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-4-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-4-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-4-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-4-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-4-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-4-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-4-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-4-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-4-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-5-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-5-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-5-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-5-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-5-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-5-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-5-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-5-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-5-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-5-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-5-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-5-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-5-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-5-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-5-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-5-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-5-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-5-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-5-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-5-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-6-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-6-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-6-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-6-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-6-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-6-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-6-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-6-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-6-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-6-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-6-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-6-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-6-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-6-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-6-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-6-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-6-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-6-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-6-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-6-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-7-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-7-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-7-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-7-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-7-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-7-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-7-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-7-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-7-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-7-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-7-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-7-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-7-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-7-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-7-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-7-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-7-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-7-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-0-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-0-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-0-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-0-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-0-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-0-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-0-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-0-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-0-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-0-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-0-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-0-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-0-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-0-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-0-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-0-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-0-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-0-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-1-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-1-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-1-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-1-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-1-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-1-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-1-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-1-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-1-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-1-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-1-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-1-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-1-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-1-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-1-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-1-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-1-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-1-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-1-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-1-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-2-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-2-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-2-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-2-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-2-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-2-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-2-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-2-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-2-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-2-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-2-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-2-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-2-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-2-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-2-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-2-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-2-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-2-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-2-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-2-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-3-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-3-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-3-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-3-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-3-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-3-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-3-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-3-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-3-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-3-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-3-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-3-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-3-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-3-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-3-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-3-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-3-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-3-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-3-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-3-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-4-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-4-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-4-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-4-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-4-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-4-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-4-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-4-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-4-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-4-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-4-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-4-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-4-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-4-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-4-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-4-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-4-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-4-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-4-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-4-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-5-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-5-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-5-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-5-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-5-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-5-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-5-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-5-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-5-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-5-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-5-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-5-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-5-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-5-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-5-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-5-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-5-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-5-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-5-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-5-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-6-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-6-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-6-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-6-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-6-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-6-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-6-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-6-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-6-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-6-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-6-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-6-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-6-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-6-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-6-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-6-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-6-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-6-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-6-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-6-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-7-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-7-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-7-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-7-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-7-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-7-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-7-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-7-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-7-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-7-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-7-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-7-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-7-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-7-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-7-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-7-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-7-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-7-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-0-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-0-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-0-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-0-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-0-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-0-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-0-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-0-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-0-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-0-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-0-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-0-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-0-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-0-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-0-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-0-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-0-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-0-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-1-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-1-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-1-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-1-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-1-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-1-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-1-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-1-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-1-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-1-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-1-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-1-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-1-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-1-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-1-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-1-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-1-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-1-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-1-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-1-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-2-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-2-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-2-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-2-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-2-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-2-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-2-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-2-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-2-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-2-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-2-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-2-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-2-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-2-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-2-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-2-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-2-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-2-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-2-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-2-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-3-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-3-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-3-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-3-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-3-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-3-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-3-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-3-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-3-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-3-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-3-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-3-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-3-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-3-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-3-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-3-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-3-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-3-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-3-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-3-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-4-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-4-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-4-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-4-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-4-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-4-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-4-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-4-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-4-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-4-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-4-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-4-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-4-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-4-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-4-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-4-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-4-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-4-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-4-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-4-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-5-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-5-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-5-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-5-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-5-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-5-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-5-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-5-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-5-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-5-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-5-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-5-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-5-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-5-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-5-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-5-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-5-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-5-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-5-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-5-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-6-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-6-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-6-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-6-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-6-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-6-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-6-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-6-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-6-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-6-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-6-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-6-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-6-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-6-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-6-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-6-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-6-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-6-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-6-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-6-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-7-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-7-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-7-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-7-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-7-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-7-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-7-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-7-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-7-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-7-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-7-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-7-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-7-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-7-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-7-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-7-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-7-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-7-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-0-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-0-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-0-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-0-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-0-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-0-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-0-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-0-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-0-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-0-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-0-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-0-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-0-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-0-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-0-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-0-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-0-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-0-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-1-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-1-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-1-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-1-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-1-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-1-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-1-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-1-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-1-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-1-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-1-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-1-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-1-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-1-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-1-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-1-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-1-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-1-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-1-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-1-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-2-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-2-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-2-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-2-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-2-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-2-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-2-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-2-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-2-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-2-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-2-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-2-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-2-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-2-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-2-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-2-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-2-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-2-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-2-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-2-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-3-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-3-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-3-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-3-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-3-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-3-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-3-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-3-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-3-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-3-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-3-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-3-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-3-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-3-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-3-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-3-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-3-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-3-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-3-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-3-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-4-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-4-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-4-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-4-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-4-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-4-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-4-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-4-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-4-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-4-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-4-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-4-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-4-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-4-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-4-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-4-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-4-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-4-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-4-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-4-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-5-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-5-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-5-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-5-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-5-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-5-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-5-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-5-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-5-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-5-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-5-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-5-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-5-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-5-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-5-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-5-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-5-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-5-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-5-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-5-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-6-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-6-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-6-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-6-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-6-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-6-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-6-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-6-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-6-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-6-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-6-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-6-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-6-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-6-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-6-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-6-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-6-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-6-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-6-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-6-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-7-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-7-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-7-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-7-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-7-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-7-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-7-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-7-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-7-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-7-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-7-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-7-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-7-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-7-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-7-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-7-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-7-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-7-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-0-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-0-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-0-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-0-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-0-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-0-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-0-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-0-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-0-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-0-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-0-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-0-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-0-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-0-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-0-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-0-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-0-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-0-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-1-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-1-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-1-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-1-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-1-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-1-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-1-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-1-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-1-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-1-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-1-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-1-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-1-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-1-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-1-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-1-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-1-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-1-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-1-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-1-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-2-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-2-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-2-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-2-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-2-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-2-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-2-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-2-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-2-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-2-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-2-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-2-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-2-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-2-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-2-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-2-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-2-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-2-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-2-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-2-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-3-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-3-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-3-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-3-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-3-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-3-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-3-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-3-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-3-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-3-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-3-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-3-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-3-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-3-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-3-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-3-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-3-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-3-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-3-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-3-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-4-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-4-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-4-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-4-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-4-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-4-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-4-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-4-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-4-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-4-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-4-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-4-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-4-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-4-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-4-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-4-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-4-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-4-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-4-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-4-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-5-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-5-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-5-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-5-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-5-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-5-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-5-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-5-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-5-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-5-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-5-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-5-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-5-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-5-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-5-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-5-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-5-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-5-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-5-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-5-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-6-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-6-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-6-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-6-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-6-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-6-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-6-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-6-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-6-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-6-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-6-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-6-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-6-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-6-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-6-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-6-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-6-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-6-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-6-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-6-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-7-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-7-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-7-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-7-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-7-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-7-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-7-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-7-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-7-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-7-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-7-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-7-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-7-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-7-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-7-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-7-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-7-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-7-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-0-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-0-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-0-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-0-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-0-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-0-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-0-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-0-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-0-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-0-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-0-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-0-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-0-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-0-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-0-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-0-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-0-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-0-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-1-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-1-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-1-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-1-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-1-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-1-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-1-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-1-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-1-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-1-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-1-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-1-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-1-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-1-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-1-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-1-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-1-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-1-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-1-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-1-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-2-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-2-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-2-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-2-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-2-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-2-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-2-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-2-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-2-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-2-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-2-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-2-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-2-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-2-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-2-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-2-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-2-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-2-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-2-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-2-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-3-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-3-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-3-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-3-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-3-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-3-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-3-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-3-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-3-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-3-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-3-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-3-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-3-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-3-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-3-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-3-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-3-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-3-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-3-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-3-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-4-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-4-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-4-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-4-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-4-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-4-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-4-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-4-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-4-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-4-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-4-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-4-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-4-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-4-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-4-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-4-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-4-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-4-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-4-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-4-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-5-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-5-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-5-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-5-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-5-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-5-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-5-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-5-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-5-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-5-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-5-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-5-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-5-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-5-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-5-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-5-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-5-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-5-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-5-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-5-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-6-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-6-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-6-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-6-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-6-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-6-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-6-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-6-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-6-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-6-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-6-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-6-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-6-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-6-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-6-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-6-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-6-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-6-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-6-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-6-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-7-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-7-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-7-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-7-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-7-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-7-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-7-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-7-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-7-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-7-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-7-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-7-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-7-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-7-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-7-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-7-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-7-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-7-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-0-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-0-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-0-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-0-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-0-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-0-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-0-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-0-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-0-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-0-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-0-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-0-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-0-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-0-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-0-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-0-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-0-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-0-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-1-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-1-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-1-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-1-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-1-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-1-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-1-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-1-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-1-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-1-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-1-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-1-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-1-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-1-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-1-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-1-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-1-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-1-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-1-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-1-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-2-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-2-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-2-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-2-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-2-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-2-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-2-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-2-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-2-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-2-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-2-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-2-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-2-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-2-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-2-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-2-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-2-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-2-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-2-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-2-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-3-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-3-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-3-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-3-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-3-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-3-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-3-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-3-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-3-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-3-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-3-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-3-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-3-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-3-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-3-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-3-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-3-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-3-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-3-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-3-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-4-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-4-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-4-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-4-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-4-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-4-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-4-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-4-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-4-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-4-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-4-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-4-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-4-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-4-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-4-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-4-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-4-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-4-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-4-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-4-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-5-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-5-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-5-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-5-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-5-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-5-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-5-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-5-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-5-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-5-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-5-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-5-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-5-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-5-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-5-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-5-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-5-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-5-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-5-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-5-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-6-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-6-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-6-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-6-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-6-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-6-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-6-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-6-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-6-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-6-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-6-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-6-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-6-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-6-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-6-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-6-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-6-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-6-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-6-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-6-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-7-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-7-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-7-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-7-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-7-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-7-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-7-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-7-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-7-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-7-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-7-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-7-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-7-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-7-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-7-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-7-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-7-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-7-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-0-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-0-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-0-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-0-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-0-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-0-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-0-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-0-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-0-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-0-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-0-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-0-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-0-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-0-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-0-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-0-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-0-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-0-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-1-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-1-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-1-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-1-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-1-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-1-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-1-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-1-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-1-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-1-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-1-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-1-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-1-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-1-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-1-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-1-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-1-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-1-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-1-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-1-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-2-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-2-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-2-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-2-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-2-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-2-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-2-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-2-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-2-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-2-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-2-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-2-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-2-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-2-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-2-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-2-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-2-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-2-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-2-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-2-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-3-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-3-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-3-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-3-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-3-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-3-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-3-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-3-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-3-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-3-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-3-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-3-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-3-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-3-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-3-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-3-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-3-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-3-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-3-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-3-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-4-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-4-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-4-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-4-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-4-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-4-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-4-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-4-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-4-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-4-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-4-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-4-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-4-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-4-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-4-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-4-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-4-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-4-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-4-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-4-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-5-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-5-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-5-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-5-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-5-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-5-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-5-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-5-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-5-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-5-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-5-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-5-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-5-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-5-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-5-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-5-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-5-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-5-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-5-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-5-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-6-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-6-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-6-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-6-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-6-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-6-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-6-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-6-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-6-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-6-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-6-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-6-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-6-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-6-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-6-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-6-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-6-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-6-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-6-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-6-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-7-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-7-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-7-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-7-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-7-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-7-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-7-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-7-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-7-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-7-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-7-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-7-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-7-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-7-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-7-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-7-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-7-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-7-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-0-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-0-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-0-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-0-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-0-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-0-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-0-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-0-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-0-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-0-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-0-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-0-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-0-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-0-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-0-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-0-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-0-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-0-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-1-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-1-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-1-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-1-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-1-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-1-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-1-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-1-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-1-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-1-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-1-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-1-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-1-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-1-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-1-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-1-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-1-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-1-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-1-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-1-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-2-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-2-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-2-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-2-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-2-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-2-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-2-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-2-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-2-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-2-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-2-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-2-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-2-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-2-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-2-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-2-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-2-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-2-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-2-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-2-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-3-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-3-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-3-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-3-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-3-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-3-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-3-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-3-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-3-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-3-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-3-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-3-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-3-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-3-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-3-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-3-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-3-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-3-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-3-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-3-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-4-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-4-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-4-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-4-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-4-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-4-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-4-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-4-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-4-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-4-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-4-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-4-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-4-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-4-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-4-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-4-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-4-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-4-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-4-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-4-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-5-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-5-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-5-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-5-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-5-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-5-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-5-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-5-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-5-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-5-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-5-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-5-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-5-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-5-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-5-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-5-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-5-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-5-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-5-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-5-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-6-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-6-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-6-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-6-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-6-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-6-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-6-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-6-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-6-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-6-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-6-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-6-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-6-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-6-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-6-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-6-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-6-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-6-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-6-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-6-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-7-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-7-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-7-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-7-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-7-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-7-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-7-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-7-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-7-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-7-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-7-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-7-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-7-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-7-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-7-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-7-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-7-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-7-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-0-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-0-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-0-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-0-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-0-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-0-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-0-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-0-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-0-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-0-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-0-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-0-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-0-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-0-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-0-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-0-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-0-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-0-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-1-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-1-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-1-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-1-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-1-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-1-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-1-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-1-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-1-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-1-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-1-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-1-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-1-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-1-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-1-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-1-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-1-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-1-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-1-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-1-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-2-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-2-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-2-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-2-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-2-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-2-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-2-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-2-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-2-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-2-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-2-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-2-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-2-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-2-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-2-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-2-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-2-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-2-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-2-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-2-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-3-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-3-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-3-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-3-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-3-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-3-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-3-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-3-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-3-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-3-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-3-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-3-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-3-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-3-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-3-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-3-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-3-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-3-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-3-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-3-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-4-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-4-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-4-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-4-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-4-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-4-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-4-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-4-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-4-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-4-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-4-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-4-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-4-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-4-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-4-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-4-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-4-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-4-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-4-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-4-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-5-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-5-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-5-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-5-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-5-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-5-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-5-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-5-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-5-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-5-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-5-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-5-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-5-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-5-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-5-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-5-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-5-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-5-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-5-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-5-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-6-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-6-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-6-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-6-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-6-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-6-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-6-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-6-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-6-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-6-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-6-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-6-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-6-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-6-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-6-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-6-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-6-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-6-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-6-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-6-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-7-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-7-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-7-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-7-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-7-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-7-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-7-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-7-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-7-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-7-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-7-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-7-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-7-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-7-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-7-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-7-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-7-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-7-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-0-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-0-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-0-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-0-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-0-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-0-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-0-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-0-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-0-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-0-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-0-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-0-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-0-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-0-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-0-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-0-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-0-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-0-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-1-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-1-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-1-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-1-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-1-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-1-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-1-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-1-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-1-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-1-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-1-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-1-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-1-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-1-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-1-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-1-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-1-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-1-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-1-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-1-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-2-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-2-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-2-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-2-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-2-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-2-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-2-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-2-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-2-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-2-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-2-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-2-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-2-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-2-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-2-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-2-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-2-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-2-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-2-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-2-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-3-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-3-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-3-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-3-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-3-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-3-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-3-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-3-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-3-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-3-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-3-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-3-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-3-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-3-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-3-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-3-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-3-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-3-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-3-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-3-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-4-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-4-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-4-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-4-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-4-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-4-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-4-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-4-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-4-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-4-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-4-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-4-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-4-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-4-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-4-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-4-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-4-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-4-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-4-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-4-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-5-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-5-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-5-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-5-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-5-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-5-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-5-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-5-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-5-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-5-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-5-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-5-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-5-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-5-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-5-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-5-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-5-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-5-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-5-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-5-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-6-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-6-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-6-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-6-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-6-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-6-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-6-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-6-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-6-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-6-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-6-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-6-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-6-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-6-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-6-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-6-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-6-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-6-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-6-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-6-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-7-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-7-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-7-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-7-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-7-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-7-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-7-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-7-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-7-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-7-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-7-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-7-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-7-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-7-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-7-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-7-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-7-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-7-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end1.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-1/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-2/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-3/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-4/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-5/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-6/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-7/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-8/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-9/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-0/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-1/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-2/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-3/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-4/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-5/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-6/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-7/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-8/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-9/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-0/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-1/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-2/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-3/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-4/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-5/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-6/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-7/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-8/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-9/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-0/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-1/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-2/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-3/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-4/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-5/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-6/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-7/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-8/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-9/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-0/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-1/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-2/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-3/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-4/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-5/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-6/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-7/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-8/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-9/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-0/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-1/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-2/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-3/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-4/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-5/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-6/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-7/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-8/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-9/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-0/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-1/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-2/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-3/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-4/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-5/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-6/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-7/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-8/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-9/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-0/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-1/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-2/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-3/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-4/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-5/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-6/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-7/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-8/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-1/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-2/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-3/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-4/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-5/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-6/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-7/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-8/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-9/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-0/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-1/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-2/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-3/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-4/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-5/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-6/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-7/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-8/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-9/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-0/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-1/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-2/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-3/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-4/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-5/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-6/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-7/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-8/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-9/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-0/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-1/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-2/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-3/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-4/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-5/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-6/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-7/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-8/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-9/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-0/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-1/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-2/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-3/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-4/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-5/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-6/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-7/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-8/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-9/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-0/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-1/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-2/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-3/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-4/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-5/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-6/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-7/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-8/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-9/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-0/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-1/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-2/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-3/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-4/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-5/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-6/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-7/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-8/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-9/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-0/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-1/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-2/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-3/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-4/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-5/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-6/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-7/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-8/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-1/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-2/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-3/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-4/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-5/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-6/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-7/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-8/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-9/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-0/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-1/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-2/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-3/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-4/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-5/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-6/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-7/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-8/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-9/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-0/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-1/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-2/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-3/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-4/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-5/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-6/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-7/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-8/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-9/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-0/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-1/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-2/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-3/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-4/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-5/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-6/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-7/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-8/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-9/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-0/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-1/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-2/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-3/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-4/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-5/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-6/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-7/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-8/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-9/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-0/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-1/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-2/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-3/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-4/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-5/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-6/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-7/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-8/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-9/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-0/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-1/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-2/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-3/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-4/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-5/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-6/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-7/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-8/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-9/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-0/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-1/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-2/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-3/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-4/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-5/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-6/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-7/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-8/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-1/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-2/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-3/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-4/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-5/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-6/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-7/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-8/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-9/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-0/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-1/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-2/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-3/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-4/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-5/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-6/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-7/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-8/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-9/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-0/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-1/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-2/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-3/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-4/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-5/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-6/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-7/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-8/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-9/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-0/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-1/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-2/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-3/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-4/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-5/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-6/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-7/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-8/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-9/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-0/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-1/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-2/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-3/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-4/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-5/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-6/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-7/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-8/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-9/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-0/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-1/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-2/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-3/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-4/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-5/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-6/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-7/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-8/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-9/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-0/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-1/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-2/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-3/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-4/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-5/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-6/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-7/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-8/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-9/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-0/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-1/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-2/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-3/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-4/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-5/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-6/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-7/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-8/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-1/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-2/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-3/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-4/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-5/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-6/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-7/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-8/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-9/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-0/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-1/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-2/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-3/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-4/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-5/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-6/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-7/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-8/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-9/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-0/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-1/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-2/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-3/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-4/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-5/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-6/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-7/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-8/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-9/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-0/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-1/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-2/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-3/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-4/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-5/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-6/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-7/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-8/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-9/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-0/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-1/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-2/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-3/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-4/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-5/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-6/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-7/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-8/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-9/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-0/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-1/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-2/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-3/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-4/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-5/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-6/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-7/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-8/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-9/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-0/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-1/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-2/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-3/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-4/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-5/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-6/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-7/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-8/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-9/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-0/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-1/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-2/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-3/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-4/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-5/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-6/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-7/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-8/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-1/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-2/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-3/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-4/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-5/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-6/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-7/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-8/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-9/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-0/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-1/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-2/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-3/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-4/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-5/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-6/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-7/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-8/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-9/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-0/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-1/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-2/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-3/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-4/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-5/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-6/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-7/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-8/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-9/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-0/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-1/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-2/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-3/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-4/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-5/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-6/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-7/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-8/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-9/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-0/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-1/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-2/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-3/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-4/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-5/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-6/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-7/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-8/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-9/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-0/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-1/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-2/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-3/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-4/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-5/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-6/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-7/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-8/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-9/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-0/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-1/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-2/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-3/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-4/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-5/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-6/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-7/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-8/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-9/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-0/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-1/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-2/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-3/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-4/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-5/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-6/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-7/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-8/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-0-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-0-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-0-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-0-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-0-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-0-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-0-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-0-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-0-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-0-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-0-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-0-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-0-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-0-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-0-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-0-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-0-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-0-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-1-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-1-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-1-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-1-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-1-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-1-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-1-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-1-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-1-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-1-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-1-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-1-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-1-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-1-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-1-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-1-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-1-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-1-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-1-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-1-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-2-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-2-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-2-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-2-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-2-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-2-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-2-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-2-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-2-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-2-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-2-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-2-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-2-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-2-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-2-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-2-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-2-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-2-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-2-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-2-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-3-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-3-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-3-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-3-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-3-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-3-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-3-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-3-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-3-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-3-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-3-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-3-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-3-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-3-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-3-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-3-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-3-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-3-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-3-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-3-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-4-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-4-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-4-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-4-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-4-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-4-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-4-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-4-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-4-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-4-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-4-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-4-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-4-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-4-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-4-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-4-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-4-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-4-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-4-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-4-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-5-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-5-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-5-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-5-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-5-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-5-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-5-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-5-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-5-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-5-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-5-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-5-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-5-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-5-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-5-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-5-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-5-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-5-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-5-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-5-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-6-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-6-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-6-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-6-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-6-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-6-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-6-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-6-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-6-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-6-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-6-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-6-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-6-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-6-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-6-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-6-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-6-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-6-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-6-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-6-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-7-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-7-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-7-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-7-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-7-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-7-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-7-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-7-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-7-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-7-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-7-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-7-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-7-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-7-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-7-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-7-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-7-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-7-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-0-1/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-0-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-0-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-0-2/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-0-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-0-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-0-3/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-0-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-0-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-0-4/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-0-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-0-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-0-5/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-0-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-0-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-0-6/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-0-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-0-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-0-7/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-0-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-0-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-0-8/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-0-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-0-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-0-9/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-0-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-0-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-1-0/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-1-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-1-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-1-1/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-1-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-1-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-1-2/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-1-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-1-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-1-3/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-1-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-1-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-1-4/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-1-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-1-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-1-5/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-1-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-1-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-1-6/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-1-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-1-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-1-7/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-1-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-1-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-1-8/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-1-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-1-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-1-9/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-1-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-1-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-2-0/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-2-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-2-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-2-1/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-2-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-2-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-2-2/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-2-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-2-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-2-3/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-2-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-2-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-2-4/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-2-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-2-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-2-5/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-2-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-2-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-2-6/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-2-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-2-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-2-7/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-2-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-2-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-2-8/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-2-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-2-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-2-9/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-2-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-2-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-3-0/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-3-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-3-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-3-1/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-3-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-3-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-3-2/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-3-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-3-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-3-3/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-3-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-3-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-3-4/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-3-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-3-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-3-5/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-3-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-3-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-3-6/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-3-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-3-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-3-7/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-3-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-3-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-3-8/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-3-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-3-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-3-9/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-3-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-3-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-4-0/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-4-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-4-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-4-1/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-4-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-4-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-4-2/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-4-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-4-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-4-3/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-4-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-4-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-4-4/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-4-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-4-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-4-5/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-4-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-4-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-4-6/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-4-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-4-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-4-7/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-4-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-4-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-4-8/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-4-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-4-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-4-9/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-4-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-4-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-5-0/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-5-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-5-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-5-1/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-5-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-5-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-5-2/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-5-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-5-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-5-3/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-5-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-5-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-5-4/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-5-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-5-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-5-5/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-5-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-5-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-5-6/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-5-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-5-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-5-7/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-5-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-5-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-5-8/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-5-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-5-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-5-9/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-5-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-5-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-6-0/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-6-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-6-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-6-1/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-6-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-6-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-6-2/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-6-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-6-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-6-3/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-6-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-6-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-6-4/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-6-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-6-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-6-5/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-6-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-6-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-6-6/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-6-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-6-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-6-7/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-6-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-6-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-6-8/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-6-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-6-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-6-9/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-6-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-6-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-7-0/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-7-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-7-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-7-1/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-7-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-7-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-7-2/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-7-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-7-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-7-3/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-7-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-7-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-7-4/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-7-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-7-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-7-5/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-7-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-7-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-7-6/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-7-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-7-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-7-7/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-7-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-7-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-7-8/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-7-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-7-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-0-1/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-0-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-0-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-0-2/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-0-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-0-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-0-3/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-0-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-0-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-0-4/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-0-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-0-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-0-5/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-0-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-0-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-0-6/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-0-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-0-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-0-7/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-0-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-0-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-0-8/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-0-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-0-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-0-9/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-0-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-0-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-1-0/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-1-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-1-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-1-1/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-1-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-1-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-1-2/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-1-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-1-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-1-3/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-1-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-1-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-1-4/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-1-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-1-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-1-5/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-1-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-1-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-1-6/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-1-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-1-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-1-7/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-1-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-1-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-1-8/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-1-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-1-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-1-9/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-1-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-1-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-2-0/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-2-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-2-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-2-1/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-2-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-2-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-2-2/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-2-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-2-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-2-3/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-2-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-2-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-2-4/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-2-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-2-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-2-5/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-2-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-2-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-2-6/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-2-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-2-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-2-7/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-2-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-2-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-2-8/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-2-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-2-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-2-9/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-2-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-2-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-3-0/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-3-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-3-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-3-1/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-3-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-3-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-3-2/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-3-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-3-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-3-3/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-3-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-3-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-3-4/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-3-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-3-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-3-5/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-3-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-3-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-3-6/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-3-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-3-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-3-7/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-3-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-3-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-3-8/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-3-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-3-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-3-9/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-3-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-3-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-4-0/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-4-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-4-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-4-1/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-4-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-4-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-4-2/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-4-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-4-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-4-3/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-4-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-4-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-4-4/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-4-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-4-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-4-5/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-4-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-4-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-4-6/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-4-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-4-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-4-7/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-4-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-4-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-4-8/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-4-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-4-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-4-9/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-4-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-4-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-5-0/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-5-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-5-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-5-1/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-5-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-5-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-5-2/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-5-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-5-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-5-3/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-5-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-5-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-5-4/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-5-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-5-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-5-5/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-5-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-5-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-5-6/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-5-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-5-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-5-7/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-5-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-5-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-5-8/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-5-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-5-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-5-9/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-5-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-5-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-6-0/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-6-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-6-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-6-1/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-6-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-6-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-6-2/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-6-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-6-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-6-3/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-6-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-6-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-6-4/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-6-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-6-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-6-5/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-6-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-6-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-6-6/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-6-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-6-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-6-7/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-6-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-6-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-6-8/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-6-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-6-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-6-9/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-6-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-6-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-7-0/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-7-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-7-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-7-1/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-7-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-7-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-7-2/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-7-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-7-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-7-3/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-7-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-7-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-7-4/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-7-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-7-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-7-5/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-7-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-7-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-7-6/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-7-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-7-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-7-7/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-7-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-7-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-7-8/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-7-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-7-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-0-1/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-0-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-0-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-0-2/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-0-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-0-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-0-3/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-0-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-0-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-0-4/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-0-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-0-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-0-5/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-0-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-0-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-0-6/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-0-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-0-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-0-7/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-0-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-0-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-0-8/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-0-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-0-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-0-9/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-0-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-0-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-1-0/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-1-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-1-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-1-1/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-1-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-1-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-1-2/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-1-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-1-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-1-3/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-1-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-1-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-1-4/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-1-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-1-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-1-5/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-1-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-1-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-1-6/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-1-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-1-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-1-7/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-1-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-1-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-1-8/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-1-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-1-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-1-9/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-1-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-1-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-2-0/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-2-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-2-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-2-1/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-2-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-2-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-2-2/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-2-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-2-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-2-3/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-2-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-2-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-2-4/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-2-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-2-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-2-5/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-2-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-2-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-2-6/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-2-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-2-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-2-7/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-2-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-2-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-2-8/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-2-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-2-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-2-9/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-2-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-2-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-3-0/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-3-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-3-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-3-1/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-3-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-3-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-3-2/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-3-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-3-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-3-3/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-3-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-3-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-3-4/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-3-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-3-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-3-5/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-3-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-3-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-3-6/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-3-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-3-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-3-7/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-3-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-3-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-3-8/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-3-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-3-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-3-9/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-3-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-3-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-4-0/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-4-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-4-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-4-1/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-4-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-4-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-4-2/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-4-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-4-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-4-3/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-4-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-4-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-4-4/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-4-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-4-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-4-5/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-4-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-4-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-4-6/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-4-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-4-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-4-7/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-4-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-4-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-4-8/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-4-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-4-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-4-9/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-4-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-4-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-5-0/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-5-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-5-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-5-1/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-5-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-5-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-5-2/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-5-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-5-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-5-3/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-5-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-5-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-5-4/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-5-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-5-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-5-5/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-5-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-5-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-5-6/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-5-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-5-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-5-7/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-5-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-5-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-5-8/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-5-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-5-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-5-9/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-5-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-5-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-6-0/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-6-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-6-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-6-1/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-6-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-6-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-6-2/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-6-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-6-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-6-3/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-6-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-6-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-6-4/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-6-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-6-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-6-5/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-6-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-6-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-6-6/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-6-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-6-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-6-7/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-6-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-6-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-6-8/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-6-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-6-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-6-9/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-6-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-6-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-7-0/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-7-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-7-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-7-1/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-7-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-7-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-7-2/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-7-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-7-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-7-3/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-7-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-7-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-7-4/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-7-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-7-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-7-5/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-7-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-7-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-7-6/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-7-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-7-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-7-7/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-7-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-7-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-7-8/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-7-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-7-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-1/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-2/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-3/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-4/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-5/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-6/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-7/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-8/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-9/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-0/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-1/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-2/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-3/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-4/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-5/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-6/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-7/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-8/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-9/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-0/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-1/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-2/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-3/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-4/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-5/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-6/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-7/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-8/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-9/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-0/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-1/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-2/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-3/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-4/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-5/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-6/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-7/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-8/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-9/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-0/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-1/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-2/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-3/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-4/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-5/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-6/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-7/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-8/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-9/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-0/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-1/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-2/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-3/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-4/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-5/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-6/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-7/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-8/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-9/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-0/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-1/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-2/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-3/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-4/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-5/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-6/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-7/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-8/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-9/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-0/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-1/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-2/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-3/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-4/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-5/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-6/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-7/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-8/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-1/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-2/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-3/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-4/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-5/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-6/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-7/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-8/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-9/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-0/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-1/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-2/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-3/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-4/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-5/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-6/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-7/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-8/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-9/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-0/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-1/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-2/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-3/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-4/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-5/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-6/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-7/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-8/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-9/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-0/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-1/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-2/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-3/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-4/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-5/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-6/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-7/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-8/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-9/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-0/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-1/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-2/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-3/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-4/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-5/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-6/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-7/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-8/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-9/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-0/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-1/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-2/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-3/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-4/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-5/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-6/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-7/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-8/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-9/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-0/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-1/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-2/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-3/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-4/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-5/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-6/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-7/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-8/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-9/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-0/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-1/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-2/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-3/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-4/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-5/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-6/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-7/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-8/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-1/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-2/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-3/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-4/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-5/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-6/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-7/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-8/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-9/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-0/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-1/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-2/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-3/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-4/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-5/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-6/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-7/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-8/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-9/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-0/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-1/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-2/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-3/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-4/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-5/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-6/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-7/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-8/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-9/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-0/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-1/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-2/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-3/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-4/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-5/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-6/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-7/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-8/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-9/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-0/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-1/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-2/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-3/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-4/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-5/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-6/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-7/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-8/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-9/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-0/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-1/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-2/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-3/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-4/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-5/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-6/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-7/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-8/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-9/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-0/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-1/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-2/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-3/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-4/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-5/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-6/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-7/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-8/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-9/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-0/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-1/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-2/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-3/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-4/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-5/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-6/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-7/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-8/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-0-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-0-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-0-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-0-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-0-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-0-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-0-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-0-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-0-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-0-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-0-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-0-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-0-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-0-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-0-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-0-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-0-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-0-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-1-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-1-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-1-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-1-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-1-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-1-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-1-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-1-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-1-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-1-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-1-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-1-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-1-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-1-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-1-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-1-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-1-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-1-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-1-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-1-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-2-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-2-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-2-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-2-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-2-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-2-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-2-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-2-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-2-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-2-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-2-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-2-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-2-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-2-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-2-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-2-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-2-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-2-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-2-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-2-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-3-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-3-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-3-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-3-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-3-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-3-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-3-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-3-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-3-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-3-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-3-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-3-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-3-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-3-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-3-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-3-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-3-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-3-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-3-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-3-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-4-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-4-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-4-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-4-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-4-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-4-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-4-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-4-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-4-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-4-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-4-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-4-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-4-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-4-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-4-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-4-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-4-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-4-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-4-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-4-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-5-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-5-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-5-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-5-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-5-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-5-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-5-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-5-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-5-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-5-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-5-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-5-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-5-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-5-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-5-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-5-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-5-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-5-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-5-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-5-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-6-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-6-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-6-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-6-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-6-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-6-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-6-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-6-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-6-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-6-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-6-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-6-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-6-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-6-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-6-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-6-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-6-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-6-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-6-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-6-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-7-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-7-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-7-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-7-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-7-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-7-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-7-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-7-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-7-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-7-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-7-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-7-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-7-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-7-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-7-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-7-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-7-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-7-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-0-1/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-0-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-0-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-0-2/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-0-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-0-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-0-3/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-0-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-0-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-0-4/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-0-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-0-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-0-5/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-0-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-0-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-0-6/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-0-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-0-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-0-7/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-0-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-0-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-0-8/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-0-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-0-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-0-9/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-0-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-0-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-1-0/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-1-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-1-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-1-1/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-1-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-1-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-1-2/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-1-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-1-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-1-3/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-1-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-1-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-1-4/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-1-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-1-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-1-5/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-1-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-1-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-1-6/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-1-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-1-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-1-7/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-1-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-1-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-1-8/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-1-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-1-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-1-9/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-1-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-1-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-2-0/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-2-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-2-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-2-1/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-2-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-2-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-2-2/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-2-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-2-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-2-3/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-2-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-2-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-2-4/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-2-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-2-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-2-5/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-2-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-2-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-2-6/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-2-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-2-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-2-7/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-2-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-2-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-2-8/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-2-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-2-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-2-9/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-2-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-2-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-3-0/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-3-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-3-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-3-1/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-3-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-3-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-3-2/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-3-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-3-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-3-3/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-3-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-3-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-3-4/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-3-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-3-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-3-5/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-3-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-3-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-3-6/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-3-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-3-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-3-7/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-3-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-3-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-3-8/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-3-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-3-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-3-9/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-3-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-3-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-4-0/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-4-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-4-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-4-1/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-4-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-4-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-4-2/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-4-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-4-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-4-3/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-4-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-4-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-4-4/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-4-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-4-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-4-5/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-4-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-4-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-4-6/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-4-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-4-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-4-7/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-4-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-4-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-4-8/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-4-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-4-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-4-9/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-4-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-4-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-5-0/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-5-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-5-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-5-1/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-5-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-5-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-5-2/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-5-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-5-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-5-3/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-5-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-5-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-5-4/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-5-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-5-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-5-5/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-5-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-5-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-5-6/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-5-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-5-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-5-7/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-5-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-5-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-5-8/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-5-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-5-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-5-9/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-5-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-5-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-6-0/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-6-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-6-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-6-1/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-6-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-6-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-6-2/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-6-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-6-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-6-3/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-6-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-6-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-6-4/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-6-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-6-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-6-5/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-6-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-6-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-6-6/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-6-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-6-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-6-7/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-6-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-6-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-6-8/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-6-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-6-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-6-9/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-6-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-6-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-7-0/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-7-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-7-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-7-1/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-7-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-7-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-7-2/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-7-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-7-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-7-3/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-7-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-7-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-7-4/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-7-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-7-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-7-5/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-7-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-7-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-7-6/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-7-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-7-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-7-7/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-7-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-7-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-7-8/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-7-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-7-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-0-1/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-0-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-0-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-0-2/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-0-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-0-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-0-3/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-0-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-0-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-0-4/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-0-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-0-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-0-5/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-0-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-0-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-0-6/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-0-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-0-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-0-7/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-0-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-0-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-0-8/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-0-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-0-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-0-9/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-0-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-0-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-1-0/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-1-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-1-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-1-1/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-1-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-1-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-1-2/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-1-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-1-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-1-3/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-1-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-1-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-1-4/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-1-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-1-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-1-5/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-1-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-1-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-1-6/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-1-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-1-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-1-7/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-1-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-1-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-1-8/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-1-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-1-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-1-9/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-1-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-1-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-2-0/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-2-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-2-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-2-1/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-2-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-2-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-2-2/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-2-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-2-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-2-3/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-2-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-2-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-2-4/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-2-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-2-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-2-5/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-2-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-2-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-2-6/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-2-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-2-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-2-7/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-2-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-2-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-2-8/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-2-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-2-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-2-9/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-2-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-2-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-3-0/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-3-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-3-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-3-1/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-3-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-3-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-3-2/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-3-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-3-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-3-3/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-3-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-3-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-3-4/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-3-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-3-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-3-5/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-3-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-3-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-3-6/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-3-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-3-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-3-7/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-3-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-3-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-3-8/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-3-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-3-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-3-9/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-3-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-3-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-4-0/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-4-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-4-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-4-1/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-4-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-4-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-4-2/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-4-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-4-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-4-3/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-4-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-4-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-4-4/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-4-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-4-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-4-5/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-4-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-4-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-4-6/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-4-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-4-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-4-7/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-4-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-4-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-4-8/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-4-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-4-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-4-9/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-4-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-4-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-5-0/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-5-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-5-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-5-1/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-5-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-5-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-5-2/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-5-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-5-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-5-3/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-5-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-5-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-5-4/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-5-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-5-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-5-5/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-5-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-5-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-5-6/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-5-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-5-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-5-7/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-5-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-5-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-5-8/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-5-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-5-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-5-9/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-5-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-5-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-6-0/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-6-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-6-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-6-1/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-6-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-6-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-6-2/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-6-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-6-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-6-3/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-6-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-6-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-6-4/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-6-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-6-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-6-5/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-6-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-6-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-6-6/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-6-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-6-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-6-7/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-6-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-6-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-6-8/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-6-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-6-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-6-9/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-6-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-6-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-7-0/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-7-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-7-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-7-1/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-7-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-7-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-7-2/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-7-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-7-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-7-3/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-7-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-7-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-7-4/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-7-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-7-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-7-5/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-7-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-7-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-7-6/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-7-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-7-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-7-7/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-7-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-7-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-7-8/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-7-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-7-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-0-1/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-0-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-0-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-0-2/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-0-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-0-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-0-3/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-0-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-0-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-0-4/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-0-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-0-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-0-5/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-0-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-0-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-0-6/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-0-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-0-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-0-7/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-0-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-0-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-0-8/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-0-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-0-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-0-9/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-0-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-0-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-1-0/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-1-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-1-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-1-1/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-1-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-1-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-1-2/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-1-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-1-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-1-3/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-1-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-1-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-1-4/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-1-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-1-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-1-5/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-1-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-1-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-1-6/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-1-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-1-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-1-7/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-1-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-1-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-1-8/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-1-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-1-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-1-9/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-1-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-1-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-2-0/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-2-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-2-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-2-1/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-2-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-2-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-2-2/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-2-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-2-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-2-3/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-2-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-2-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-2-4/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-2-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-2-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-2-5/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-2-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-2-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-2-6/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-2-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-2-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-2-7/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-2-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-2-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-2-8/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-2-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-2-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-2-9/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-2-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-2-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-3-0/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-3-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-3-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-3-1/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-3-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-3-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-3-2/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-3-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-3-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-3-3/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-3-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-3-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-3-4/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-3-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-3-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-3-5/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-3-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-3-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-3-6/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-3-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-3-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-3-7/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-3-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-3-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-3-8/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-3-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-3-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-3-9/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-3-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-3-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-4-0/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-4-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-4-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-4-1/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-4-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-4-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-4-2/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-4-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-4-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-4-3/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-4-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-4-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-4-4/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-4-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-4-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-4-5/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-4-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-4-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-4-6/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-4-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-4-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-4-7/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-4-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-4-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-4-8/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-4-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-4-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-4-9/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-4-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-4-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-5-0/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-5-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-5-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-5-1/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-5-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-5-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-5-2/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-5-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-5-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-5-3/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-5-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-5-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-5-4/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-5-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-5-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-5-5/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-5-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-5-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-5-6/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-5-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-5-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-5-7/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-5-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-5-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-5-8/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-5-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-5-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-5-9/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-5-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-5-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-6-0/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-6-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-6-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-6-1/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-6-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-6-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-6-2/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-6-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-6-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-6-3/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-6-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-6-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-6-4/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-6-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-6-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-6-5/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-6-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-6-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-6-6/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-6-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-6-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-6-7/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-6-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-6-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-6-8/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-6-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-6-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-6-9/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-6-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-6-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-7-0/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-7-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-7-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-7-1/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-7-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-7-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-7-2/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-7-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-7-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-7-3/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-7-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-7-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-7-4/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-7-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-7-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-7-5/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-7-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-7-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-7-6/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-7-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-7-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-7-7/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-7-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-7-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-7-8/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-7-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-7-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-0-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-0-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-0-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-0-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-0-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-0-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-0-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-0-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-0-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-0-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-0-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-0-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-0-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-0-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-0-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-0-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-0-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-0-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-1-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-1-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-1-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-1-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-1-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-1-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-1-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-1-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-1-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-1-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-1-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-1-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-1-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-1-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-1-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-1-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-1-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-1-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-1-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-1-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-2-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-2-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-2-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-2-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-2-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-2-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-2-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-2-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-2-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-2-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-2-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-2-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-2-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-2-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-2-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-2-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-2-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-2-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-2-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-2-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-3-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-3-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-3-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-3-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-3-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-3-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-3-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-3-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-3-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-3-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-3-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-3-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-3-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-3-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-3-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-3-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-3-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-3-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-3-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-3-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-4-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-4-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-4-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-4-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-4-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-4-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-4-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-4-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-4-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-4-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-4-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-4-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-4-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-4-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-4-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-4-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-4-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-4-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-4-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-4-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-5-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-5-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-5-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-5-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-5-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-5-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-5-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-5-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-5-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-5-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-5-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-5-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-5-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-5-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-5-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-5-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-5-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-5-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-5-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-5-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-6-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-6-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-6-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-6-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-6-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-6-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-6-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-6-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-6-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-6-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-6-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-6-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-6-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-6-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-6-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-6-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-6-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-6-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-6-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-6-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-7-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-7-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-7-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-7-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-7-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-7-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-7-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-7-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-7-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-7-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-7-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-7-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-7-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-7-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-7-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-7-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-7-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-7-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-0-1/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-0-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-0-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-0-2/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-0-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-0-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-0-3/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-0-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-0-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-0-4/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-0-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-0-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-0-5/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-0-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-0-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-0-6/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-0-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-0-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-0-7/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-0-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-0-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-0-8/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-0-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-0-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-0-9/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-0-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-0-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-1-0/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-1-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-1-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-1-1/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-1-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-1-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-1-2/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-1-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-1-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-1-3/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-1-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-1-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-1-4/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-1-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-1-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-1-5/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-1-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-1-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-1-6/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-1-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-1-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-1-7/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-1-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-1-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-1-8/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-1-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-1-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-1-9/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-1-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-1-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-2-0/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-2-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-2-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-2-1/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-2-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-2-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-2-2/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-2-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-2-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-2-3/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-2-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-2-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-2-4/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-2-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-2-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-2-5/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-2-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-2-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-2-6/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-2-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-2-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-2-7/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-2-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-2-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-2-8/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-2-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-2-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-2-9/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-2-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-2-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-3-0/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-3-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-3-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-3-1/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-3-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-3-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-3-2/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-3-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-3-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-3-3/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-3-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-3-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-3-4/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-3-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-3-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-3-5/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-3-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-3-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-3-6/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-3-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-3-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-3-7/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-3-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-3-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-3-8/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-3-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-3-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-3-9/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-3-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-3-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-4-0/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-4-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-4-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-4-1/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-4-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-4-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-4-2/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-4-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-4-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-4-3/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-4-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-4-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-4-4/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-4-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-4-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-4-5/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-4-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-4-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-4-6/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-4-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-4-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-4-7/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-4-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-4-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-4-8/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-4-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-4-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-4-9/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-4-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-4-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-5-0/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-5-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-5-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-5-1/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-5-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-5-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-5-2/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-5-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-5-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-5-3/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-5-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-5-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-5-4/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-5-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-5-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-5-5/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-5-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-5-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-5-6/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-5-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-5-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-5-7/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-5-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-5-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-5-8/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-5-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-5-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-5-9/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-5-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-5-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-6-0/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-6-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-6-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-6-1/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-6-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-6-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-6-2/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-6-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-6-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-6-3/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-6-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-6-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-6-4/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-6-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-6-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-6-5/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-6-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-6-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-6-6/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-6-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-6-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-6-7/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-6-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-6-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-6-8/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-6-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-6-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-6-9/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-6-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-6-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-7-0/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-7-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-7-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-7-1/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-7-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-7-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-7-2/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-7-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-7-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-7-3/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-7-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-7-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-7-4/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-7-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-7-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-7-5/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-7-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-7-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-7-6/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-7-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-7-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-7-7/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-7-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-7-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-7-8/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-7-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-7-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-0-1/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-0-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-0-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-0-2/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-0-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-0-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-0-3/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-0-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-0-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-0-4/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-0-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-0-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-0-5/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-0-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-0-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-0-6/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-0-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-0-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-0-7/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-0-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-0-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-0-8/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-0-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-0-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-0-9/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-0-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-0-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-1-0/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-1-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-1-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-1-1/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-1-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-1-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-1-2/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-1-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-1-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-1-3/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-1-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-1-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-1-4/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-1-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-1-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-1-5/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-1-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-1-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-1-6/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-1-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-1-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-1-7/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-1-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-1-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-1-8/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-1-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-1-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-1-9/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-1-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-1-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-2-0/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-2-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-2-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-2-1/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-2-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-2-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-2-2/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-2-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-2-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-2-3/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-2-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-2-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-2-4/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-2-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-2-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-2-5/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-2-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-2-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-2-6/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-2-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-2-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-2-7/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-2-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-2-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-2-8/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-2-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-2-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-2-9/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-2-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-2-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-3-0/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-3-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-3-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-3-1/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-3-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-3-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-3-2/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-3-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-3-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-3-3/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-3-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-3-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-3-4/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-3-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-3-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-3-5/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-3-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-3-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-3-6/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-3-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-3-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-3-7/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-3-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-3-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-3-8/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-3-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-3-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-3-9/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-3-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-3-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-4-0/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-4-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-4-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-4-1/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-4-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-4-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-4-2/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-4-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-4-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-4-3/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-4-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-4-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-4-4/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-4-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-4-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-4-5/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-4-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-4-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-4-6/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-4-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-4-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-4-7/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-4-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-4-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-4-8/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-4-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-4-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-4-9/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-4-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-4-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-5-0/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-5-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-5-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-5-1/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-5-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-5-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-5-2/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-5-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-5-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-5-3/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-5-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-5-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-5-4/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-5-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-5-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-5-5/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-5-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-5-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-5-6/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-5-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-5-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-5-7/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-5-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-5-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-5-8/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-5-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-5-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-5-9/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-5-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-5-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-6-0/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-6-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-6-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-6-1/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-6-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-6-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-6-2/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-6-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-6-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-6-3/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-6-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-6-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-6-4/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-6-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-6-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-6-5/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-6-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-6-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-6-6/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-6-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-6-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-6-7/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-6-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-6-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-6-8/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-6-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-6-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-6-9/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-6-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-6-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-7-0/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-7-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-7-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-7-1/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-7-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-7-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-7-2/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-7-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-7-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-7-3/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-7-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-7-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-7-4/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-7-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-7-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-7-5/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-7-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-7-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-7-6/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-7-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-7-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-7-7/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-7-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-7-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-7-8/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-7-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-7-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-0-1/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-0-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-0-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-0-2/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-0-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-0-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-0-3/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-0-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-0-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-0-4/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-0-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-0-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-0-5/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-0-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-0-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-0-6/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-0-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-0-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-0-7/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-0-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-0-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-0-8/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-0-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-0-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-0-9/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-0-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-0-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-1-0/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-1-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-1-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-1-1/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-1-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-1-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-1-2/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-1-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-1-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-1-3/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-1-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-1-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-1-4/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-1-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-1-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-1-5/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-1-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-1-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-1-6/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-1-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-1-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-1-7/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-1-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-1-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-1-8/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-1-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-1-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-1-9/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-1-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-1-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-2-0/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-2-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-2-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-2-1/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-2-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-2-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-2-2/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-2-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-2-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-2-3/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-2-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-2-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-2-4/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-2-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-2-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-2-5/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-2-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-2-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-2-6/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-2-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-2-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-2-7/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-2-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-2-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-2-8/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-2-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-2-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-2-9/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-2-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-2-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-3-0/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-3-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-3-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-3-1/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-3-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-3-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-3-2/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-3-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-3-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-3-3/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-3-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-3-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-3-4/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-3-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-3-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-3-5/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-3-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-3-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-3-6/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-3-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-3-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-3-7/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-3-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-3-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-3-8/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-3-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-3-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-3-9/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-3-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-3-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-4-0/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-4-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-4-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-4-1/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-4-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-4-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-4-2/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-4-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-4-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-4-3/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-4-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-4-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-4-4/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-4-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-4-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-4-5/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-4-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-4-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-4-6/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-4-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-4-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-4-7/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-4-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-4-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-4-8/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-4-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-4-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-4-9/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-4-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-4-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-5-0/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-5-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-5-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-5-1/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-5-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-5-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-5-2/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-5-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-5-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-5-3/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-5-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-5-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-5-4/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-5-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-5-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-5-5/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-5-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-5-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-5-6/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-5-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-5-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-5-7/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-5-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-5-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-5-8/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-5-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-5-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-5-9/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-5-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-5-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-6-0/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-6-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-6-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-6-1/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-6-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-6-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-6-2/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-6-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-6-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-6-3/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-6-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-6-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-6-4/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-6-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-6-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-6-5/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-6-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-6-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-6-6/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-6-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-6-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-6-7/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-6-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-6-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-6-8/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-6-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-6-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-6-9/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-6-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-6-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-7-0/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-7-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-7-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-7-1/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-7-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-7-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-7-2/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-7-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-7-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-7-3/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-7-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-7-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-7-4/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-7-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-7-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-7-5/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-7-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-7-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-7-6/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-7-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-7-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-7-7/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-7-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-7-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-7-8/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-7-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-7-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-0-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-0-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-0-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-0-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-0-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-0-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-0-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-0-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-0-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-0-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-0-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-0-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-0-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-0-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-0-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-0-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-0-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-0-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-1-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-1-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-1-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-1-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-1-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-1-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-1-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-1-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-1-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-1-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-1-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-1-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-1-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-1-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-1-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-1-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-1-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-1-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-1-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-1-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-2-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-2-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-2-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-2-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-2-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-2-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-2-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-2-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-2-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-2-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-2-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-2-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-2-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-2-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-2-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-2-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-2-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-2-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-2-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-2-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-3-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-3-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-3-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-3-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-3-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-3-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-3-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-3-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-3-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-3-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-3-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-3-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-3-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-3-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-3-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-3-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-3-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-3-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-3-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-3-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-4-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-4-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-4-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-4-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-4-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-4-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-4-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-4-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-4-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-4-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-4-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-4-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-4-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-4-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-4-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-4-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-4-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-4-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-4-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-4-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-5-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-5-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-5-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-5-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-5-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-5-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-5-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-5-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-5-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-5-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-5-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-5-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-5-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-5-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-5-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-5-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-5-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-5-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-5-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-5-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-6-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-6-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-6-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-6-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-6-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-6-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-6-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-6-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-6-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-6-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-6-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-6-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-6-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-6-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-6-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-6-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-6-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-6-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-6-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-6-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-7-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-7-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-7-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-7-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-7-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-7-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-7-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-7-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-7-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-7-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-7-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-7-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-7-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-7-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-7-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-7-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-7-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-7-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-0-1/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-0-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-0-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-0-2/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-0-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-0-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-0-3/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-0-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-0-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-0-4/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-0-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-0-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-0-5/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-0-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-0-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-0-6/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-0-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-0-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-0-7/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-0-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-0-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-0-8/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-0-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-0-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-0-9/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-0-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-0-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-1-0/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-1-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-1-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-1-1/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-1-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-1-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-1-2/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-1-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-1-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-1-3/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-1-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-1-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-1-4/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-1-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-1-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-1-5/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-1-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-1-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-1-6/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-1-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-1-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-1-7/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-1-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-1-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-1-8/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-1-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-1-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-1-9/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-1-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-1-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-2-0/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-2-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-2-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-2-1/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-2-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-2-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-2-2/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-2-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-2-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-2-3/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-2-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-2-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-2-4/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-2-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-2-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-2-5/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-2-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-2-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-2-6/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-2-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-2-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-2-7/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-2-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-2-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-2-8/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-2-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-2-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-2-9/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-2-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-2-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-3-0/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-3-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-3-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-3-1/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-3-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-3-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-3-2/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-3-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-3-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-3-3/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-3-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-3-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-3-4/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-3-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-3-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-3-5/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-3-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-3-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-3-6/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-3-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-3-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-3-7/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-3-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-3-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-3-8/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-3-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-3-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-3-9/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-3-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-3-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-4-0/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-4-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-4-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-4-1/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-4-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-4-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-4-2/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-4-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-4-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-4-3/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-4-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-4-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-4-4/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-4-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-4-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-4-5/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-4-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-4-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-4-6/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-4-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-4-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-4-7/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-4-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-4-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-4-8/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-4-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-4-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-4-9/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-4-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-4-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-5-0/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-5-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-5-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-5-1/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-5-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-5-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-5-2/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-5-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-5-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-5-3/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-5-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-5-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-5-4/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-5-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-5-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-5-5/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-5-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-5-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-5-6/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-5-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-5-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-5-7/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-5-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-5-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-5-8/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-5-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-5-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-5-9/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-5-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-5-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-6-0/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-6-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-6-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-6-1/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-6-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-6-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-6-2/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-6-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-6-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-6-3/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-6-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-6-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-6-4/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-6-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-6-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-6-5/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-6-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-6-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-6-6/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-6-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-6-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-6-7/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-6-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-6-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-6-8/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-6-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-6-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-6-9/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-6-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-6-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-7-0/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-7-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-7-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-7-1/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-7-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-7-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-7-2/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-7-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-7-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-7-3/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-7-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-7-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-7-4/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-7-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-7-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-7-5/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-7-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-7-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-7-6/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-7-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-7-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-7-7/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-7-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-7-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-7-8/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-7-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-7-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-0-1/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-0-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-0-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-0-2/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-0-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-0-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-0-3/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-0-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-0-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-0-4/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-0-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-0-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-0-5/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-0-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-0-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-0-6/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-0-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-0-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-0-7/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-0-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-0-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-0-8/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-0-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-0-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-0-9/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-0-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-0-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-1-0/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-1-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-1-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-1-1/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-1-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-1-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-1-2/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-1-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-1-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-1-3/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-1-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-1-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-1-4/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-1-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-1-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-1-5/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-1-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-1-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-1-6/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-1-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-1-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-1-7/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-1-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-1-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-1-8/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-1-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-1-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-1-9/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-1-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-1-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-2-0/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-2-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-2-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-2-1/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-2-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-2-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-2-2/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-2-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-2-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-2-3/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-2-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-2-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-2-4/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-2-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-2-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-2-5/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-2-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-2-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-2-6/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-2-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-2-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-2-7/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-2-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-2-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-2-8/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-2-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-2-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-2-9/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-2-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-2-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-3-0/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-3-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-3-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-3-1/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-3-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-3-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-3-2/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-3-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-3-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-3-3/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-3-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-3-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-3-4/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-3-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-3-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-3-5/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-3-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-3-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-3-6/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-3-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-3-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-3-7/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-3-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-3-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-3-8/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-3-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-3-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-3-9/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-3-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-3-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-4-0/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-4-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-4-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-4-1/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-4-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-4-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-4-2/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-4-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-4-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-4-3/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-4-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-4-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-4-4/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-4-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-4-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-4-5/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-4-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-4-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-4-6/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-4-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-4-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-4-7/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-4-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-4-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-4-8/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-4-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-4-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-4-9/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-4-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-4-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-5-0/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-5-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-5-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-5-1/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-5-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-5-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-5-2/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-5-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-5-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-5-3/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-5-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-5-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-5-4/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-5-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-5-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-5-5/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-5-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-5-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-5-6/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-5-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-5-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-5-7/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-5-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-5-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-5-8/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-5-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-5-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-5-9/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-5-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-5-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-6-0/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-6-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-6-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-6-1/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-6-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-6-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-6-2/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-6-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-6-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-6-3/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-6-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-6-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-6-4/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-6-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-6-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-6-5/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-6-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-6-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-6-6/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-6-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-6-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-6-7/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-6-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-6-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-6-8/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-6-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-6-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-6-9/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-6-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-6-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-7-0/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-7-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-7-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-7-1/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-7-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-7-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-7-2/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-7-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-7-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-7-3/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-7-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-7-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-7-4/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-7-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-7-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-7-5/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-7-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-7-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-7-6/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-7-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-7-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-7-7/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-7-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-7-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-7-8/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-7-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-7-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-0-1/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-0-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-0-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-0-2/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-0-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-0-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-0-3/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-0-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-0-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-0-4/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-0-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-0-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-0-5/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-0-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-0-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-0-6/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-0-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-0-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-0-7/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-0-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-0-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-0-8/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-0-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-0-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-0-9/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-0-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-0-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-1-0/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-1-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-1-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-1-1/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-1-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-1-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-1-2/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-1-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-1-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-1-3/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-1-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-1-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-1-4/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-1-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-1-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-1-5/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-1-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-1-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-1-6/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-1-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-1-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-1-7/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-1-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-1-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-1-8/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-1-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-1-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-1-9/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-1-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-1-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-2-0/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-2-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-2-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-2-1/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-2-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-2-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-2-2/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-2-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-2-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-2-3/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-2-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-2-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-2-4/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-2-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-2-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-2-5/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-2-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-2-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-2-6/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-2-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-2-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-2-7/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-2-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-2-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-2-8/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-2-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-2-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-2-9/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-2-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-2-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-3-0/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-3-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-3-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-3-1/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-3-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-3-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-3-2/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-3-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-3-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-3-3/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-3-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-3-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-3-4/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-3-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-3-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-3-5/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-3-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-3-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-3-6/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-3-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-3-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-3-7/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-3-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-3-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-3-8/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-3-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-3-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-3-9/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-3-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-3-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-4-0/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-4-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-4-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-4-1/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-4-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-4-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-4-2/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-4-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-4-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-4-3/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-4-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-4-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-4-4/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-4-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-4-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-4-5/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-4-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-4-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-4-6/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-4-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-4-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-4-7/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-4-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-4-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-4-8/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-4-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-4-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-4-9/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-4-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-4-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-5-0/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-5-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-5-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-5-1/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-5-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-5-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-5-2/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-5-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-5-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-5-3/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-5-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-5-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-5-4/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-5-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-5-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-5-5/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-5-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-5-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-5-6/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-5-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-5-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-5-7/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-5-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-5-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-5-8/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-5-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-5-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-5-9/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-5-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-5-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-6-0/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-6-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-6-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-6-1/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-6-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-6-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-6-2/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-6-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-6-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-6-3/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-6-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-6-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-6-4/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-6-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-6-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-6-5/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-6-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-6-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-6-6/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-6-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-6-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-6-7/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-6-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-6-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-6-8/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-6-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-6-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-6-9/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-6-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-6-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-7-0/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-7-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-7-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-7-1/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-7-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-7-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-7-2/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-7-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-7-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-7-3/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-7-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-7-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-7-4/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-7-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-7-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-7-5/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-7-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-7-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-7-6/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-7-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-7-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-7-7/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-7-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-7-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-7-8/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-7-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-7-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-1/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-2/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-3/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-4/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-5/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-6/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-7/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-8/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-9/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-0/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-1/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-2/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-3/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-4/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-5/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-6/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-7/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-8/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-9/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-0/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-1/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-2/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-3/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-4/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-5/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-6/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-7/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-8/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-9/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-0/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-1/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-2/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-3/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-4/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-5/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-6/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-7/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-8/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-9/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-0/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-1/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-2/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-3/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-4/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-5/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-6/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-7/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-8/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-9/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-0/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-1/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-2/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-3/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-4/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-5/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-6/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-7/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-8/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-9/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-0/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-1/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-2/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-3/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-4/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-5/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-6/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-7/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-8/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-9/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-0/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-1/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-2/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-3/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-4/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-5/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-6/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-7/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-8/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-1/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-2/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-3/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-4/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-5/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-6/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-7/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-8/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-9/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-0/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-1/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-2/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-3/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-4/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-5/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-6/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-7/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-8/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-9/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-0/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-1/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-2/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-3/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-4/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-5/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-6/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-7/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-8/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-9/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-0/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-1/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-2/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-3/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-4/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-5/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-6/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-7/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-8/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-9/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-0/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-1/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-2/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-3/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-4/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-5/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-6/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-7/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-8/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-9/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-0/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-1/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-2/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-3/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-4/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-5/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-6/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-7/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-8/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-9/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-0/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-1/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-2/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-3/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-4/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-5/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-6/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-7/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-8/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-9/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-0/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-1/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-2/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-3/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-4/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-5/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-6/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-7/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-8/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-1/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-2/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-3/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-4/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-5/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-6/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-7/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-8/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-9/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-0/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-1/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-2/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-3/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-4/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-5/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-6/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-7/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-8/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-9/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-0/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-1/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-2/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-3/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-4/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-5/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-6/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-7/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-8/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-9/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-0/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-1/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-2/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-3/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-4/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-5/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-6/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-7/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-8/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-9/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-0/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-1/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-2/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-3/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-4/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-5/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-6/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-7/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-8/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-9/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-0/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-1/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-2/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-3/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-4/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-5/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-6/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-7/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-8/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-9/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-0/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-1/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-2/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-3/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-4/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-5/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-6/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-7/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-8/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-9/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-0/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-1/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-2/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-3/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-4/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-5/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-6/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-7/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-8/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL305_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL306_kidney_atac_redo.barcodes_annotated.end1.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-1/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-2/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-3/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-4/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-5/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-6/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-7/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-8/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-9/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-0/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-1/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-2/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-3/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-4/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-5/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-6/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-7/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-8/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-9/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-0/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-1/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-2/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-3/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-4/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-5/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-6/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-7/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-8/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-9/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-0/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-1/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-2/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-3/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-4/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-5/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-6/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-7/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-8/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-9/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-0/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-1/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-2/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-3/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-4/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-5/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-6/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-7/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-8/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-9/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-0/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-1/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-2/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-3/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-4/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-5/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-6/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-7/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-8/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-9/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-0/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-1/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-2/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-3/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-4/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-5/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-6/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-7/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-8/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-9/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-0/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-1/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-2/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-3/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-4/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-5/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-6/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-7/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-8/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-1/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-2/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-3/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-4/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-5/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-6/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-7/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-8/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-9/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-0/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-1/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-2/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-3/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-4/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-5/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-6/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-7/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-8/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-9/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-0/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-1/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-2/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-3/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-4/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-5/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-6/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-7/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-8/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-9/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-0/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-1/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-2/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-3/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-4/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-5/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-6/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-7/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-8/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-9/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-0/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-1/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-2/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-3/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-4/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-5/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-6/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-7/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-8/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-9/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-0/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-1/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-2/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-3/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-4/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-5/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-6/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-7/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-8/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-9/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-0/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-1/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-2/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-3/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-4/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-5/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-6/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-7/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-8/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-9/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-0/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-1/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-2/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-3/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-4/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-5/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-6/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-7/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-8/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-1/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-2/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-3/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-4/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-5/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-6/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-7/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-8/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-9/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-0/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-1/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-2/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-3/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-4/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-5/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-6/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-7/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-8/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-9/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-0/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-1/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-2/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-3/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-4/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-5/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-6/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-7/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-8/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-9/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-0/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-1/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-2/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-3/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-4/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-5/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-6/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-7/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-8/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-9/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-0/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-1/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-2/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-3/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-4/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-5/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-6/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-7/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-8/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-9/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-0/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-1/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-2/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-3/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-4/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-5/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-6/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-7/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-8/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-9/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-0/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-1/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-2/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-3/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-4/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-5/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-6/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-7/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-8/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-9/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-0/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-1/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-2/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-3/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-4/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-5/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-6/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-7/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-8/skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T11_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T11_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-0-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-0-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-0-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-0-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-0-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-0-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-0-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-0-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-0-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-0-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-0-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-0-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-0-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-0-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-0-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-0-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-0-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-0-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-1-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-1-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-1-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-1-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-1-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-1-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-1-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-1-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-1-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-1-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-1-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-1-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-1-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-1-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-1-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-1-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-1-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-1-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-1-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-1-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-2-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-2-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-2-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-2-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-2-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-2-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-2-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-2-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-2-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-2-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-2-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-2-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-2-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-2-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-2-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-2-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-2-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-2-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-2-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-2-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-3-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-3-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-3-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-3-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-3-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-3-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-3-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-3-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-3-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-3-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-3-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-3-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-3-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-3-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-3-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-3-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-3-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-3-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-3-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-3-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-4-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-4-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-4-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-4-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-4-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-4-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-4-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-4-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-4-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-4-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-4-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-4-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-4-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-4-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-4-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-4-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-4-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-4-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-4-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-4-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-5-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-5-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-5-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-5-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-5-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-5-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-5-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-5-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-5-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-5-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-5-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-5-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-5-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-5-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-5-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-5-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-5-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-5-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-5-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-5-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-6-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-6-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-6-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-6-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-6-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-6-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-6-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-6-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-6-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-6-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-6-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-6-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-6-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-6-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-6-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-6-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-6-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-6-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-6-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-6-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-7-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-7-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-7-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-7-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-7-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-7-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-7-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-7-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-7-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-7-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-7-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-7-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-7-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-7-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-7-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-7-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-7-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-7-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-0-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-0-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-0-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-0-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-0-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-0-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-0-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-0-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-0-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-0-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-0-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-0-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-0-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-0-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-0-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-0-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-0-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-0-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-1-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-1-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-1-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-1-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-1-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-1-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-1-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-1-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-1-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-1-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-1-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-1-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-1-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-1-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-1-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-1-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-1-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-1-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-1-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-1-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-2-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-2-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-2-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-2-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-2-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-2-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-2-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-2-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-2-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-2-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-2-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-2-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-2-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-2-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-2-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-2-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-2-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-2-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-2-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-2-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-3-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-3-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-3-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-3-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-3-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-3-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-3-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-3-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-3-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-3-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-3-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-3-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-3-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-3-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-3-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-3-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-3-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-3-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-3-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-3-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-4-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-4-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-4-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-4-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-4-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-4-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-4-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-4-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-4-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-4-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-4-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-4-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-4-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-4-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-4-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-4-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-4-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-4-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-4-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-4-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-5-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-5-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-5-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-5-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-5-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-5-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-5-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-5-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-5-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-5-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-5-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-5-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-5-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-5-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-5-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-5-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-5-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-5-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-5-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-5-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-6-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-6-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-6-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-6-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-6-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-6-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-6-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-6-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-6-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-6-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-6-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-6-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-6-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-6-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-6-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-6-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-6-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-6-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-6-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-6-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-7-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-7-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-7-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-7-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-7-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-7-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-7-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-7-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-7-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-7-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-7-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-7-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-7-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-7-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-7-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-7-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-7-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-7-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-0-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-0-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-0-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-0-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-0-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-0-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-0-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-0-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-0-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-0-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-0-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-0-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-0-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-0-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-0-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-0-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-0-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-0-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-1-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-1-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-1-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-1-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-1-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-1-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-1-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-1-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-1-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-1-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-1-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-1-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-1-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-1-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-1-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-1-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-1-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-1-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-1-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-1-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-2-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-2-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-2-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-2-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-2-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-2-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-2-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-2-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-2-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-2-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-2-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-2-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-2-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-2-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-2-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-2-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-2-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-2-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-2-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-2-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-3-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-3-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-3-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-3-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-3-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-3-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-3-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-3-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-3-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-3-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-3-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-3-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-3-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-3-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-3-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-3-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-3-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-3-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-3-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-3-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-4-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-4-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-4-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-4-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-4-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-4-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-4-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-4-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-4-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-4-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-4-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-4-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-4-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-4-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-4-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-4-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-4-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-4-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-4-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-4-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-5-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-5-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-5-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-5-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-5-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-5-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-5-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-5-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-5-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-5-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-5-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-5-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-5-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-5-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-5-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-5-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-5-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-5-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-5-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-5-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-6-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-6-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-6-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-6-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-6-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-6-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-6-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-6-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-6-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-6-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-6-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-6-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-6-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-6-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-6-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-6-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-6-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-6-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-6-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-6-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-7-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-7-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-7-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-7-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-7-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-7-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-7-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-7-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-7-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-7-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-7-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-7-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-7-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-7-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-7-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-7-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-7-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-7-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-0-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-0-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-0-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-0-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-0-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-0-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-0-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-0-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-0-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-0-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-0-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-0-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-0-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-0-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-0-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-0-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-0-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-0-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-1-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-1-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-1-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-1-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-1-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-1-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-1-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-1-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-1-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-1-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-1-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-1-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-1-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-1-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-1-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-1-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-1-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-1-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-1-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-1-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-2-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-2-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-2-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-2-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-2-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-2-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-2-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-2-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-2-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-2-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-2-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-2-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-2-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-2-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-2-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-2-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-2-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-2-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-2-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-2-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-3-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-3-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-3-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-3-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-3-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-3-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-3-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-3-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-3-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-3-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-3-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-3-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-3-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-3-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-3-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-3-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-3-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-3-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-3-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-3-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-4-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-4-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-4-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-4-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-4-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-4-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-4-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-4-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-4-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-4-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-4-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-4-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-4-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-4-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-4-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-4-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-4-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-4-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-4-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-4-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-5-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-5-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-5-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-5-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-5-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-5-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-5-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-5-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-5-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-5-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-5-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-5-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-5-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-5-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-5-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-5-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-5-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-5-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-5-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-5-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-6-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-6-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-6-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-6-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-6-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-6-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-6-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-6-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-6-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-6-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-6-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-6-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-6-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-6-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-6-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-6-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-6-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-6-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-6-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-6-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-7-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-7-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-7-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-7-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-7-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-7-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-7-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-7-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-7-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-7-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-7-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-7-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-7-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-7-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-7-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-7-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-7-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-7-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-0-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-0-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-0-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-0-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-0-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-0-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-0-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-0-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-0-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-0-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-0-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-0-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-0-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-0-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-0-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-0-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-0-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-0-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-1-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-1-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-1-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-1-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-1-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-1-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-1-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-1-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-1-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-1-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-1-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-1-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-1-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-1-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-1-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-1-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-1-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-1-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-1-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-1-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-2-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-2-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-2-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-2-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-2-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-2-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-2-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-2-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-2-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-2-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-2-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-2-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-2-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-2-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-2-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-2-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-2-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-2-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-2-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-2-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-3-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-3-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-3-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-3-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-3-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-3-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-3-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-3-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-3-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-3-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-3-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-3-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-3-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-3-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-3-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-3-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-3-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-3-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-3-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-3-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-4-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-4-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-4-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-4-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-4-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-4-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-4-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-4-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-4-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-4-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-4-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-4-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-4-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-4-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-4-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-4-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-4-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-4-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-4-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-4-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-5-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-5-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-5-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-5-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-5-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-5-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-5-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-5-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-5-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-5-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-5-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-5-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-5-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-5-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-5-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-5-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-5-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-5-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-5-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-5-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-6-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-6-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-6-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-6-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-6-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-6-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-6-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-6-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-6-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-6-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-6-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-6-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-6-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-6-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-6-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-6-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-6-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-6-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-6-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-6-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-7-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-7-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-7-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-7-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-7-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-7-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-7-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-7-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-7-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-7-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-7-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-7-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-7-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-7-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-7-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-7-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-7-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L1-7-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-0-1/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-0-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-0-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-0-2/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-0-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-0-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-0-3/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-0-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-0-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-0-4/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-0-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-0-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-0-5/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-0-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-0-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-0-6/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-0-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-0-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-0-7/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-0-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-0-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-0-8/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-0-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-0-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-0-9/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-0-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-0-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-1-0/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-1-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-1-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-1-1/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-1-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-1-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-1-2/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-1-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-1-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-1-3/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-1-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-1-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-1-4/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-1-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-1-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-1-5/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-1-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-1-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-1-6/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-1-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-1-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-1-7/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-1-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-1-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-1-8/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-1-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-1-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-1-9/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-1-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-1-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-2-0/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-2-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-2-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-2-1/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-2-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-2-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-2-2/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-2-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-2-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-2-3/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-2-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-2-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-2-4/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-2-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-2-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-2-5/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-2-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-2-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-2-6/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-2-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-2-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-2-7/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-2-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-2-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-2-8/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-2-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-2-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-2-9/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-2-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-2-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-3-0/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-3-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-3-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-3-1/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-3-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-3-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-3-2/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-3-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-3-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-3-3/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-3-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-3-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-3-4/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-3-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-3-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-3-5/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-3-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-3-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-3-6/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-3-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-3-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-3-7/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-3-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-3-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-3-8/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-3-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-3-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-3-9/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-3-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-3-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-4-0/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-4-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-4-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-4-1/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-4-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-4-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-4-2/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-4-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-4-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-4-3/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-4-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-4-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-4-4/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-4-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-4-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-4-5/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-4-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-4-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-4-6/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-4-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-4-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-4-7/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-4-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-4-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-4-8/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-4-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-4-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-4-9/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-4-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-4-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-5-0/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-5-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-5-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-5-1/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-5-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-5-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-5-2/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-5-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-5-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-5-3/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-5-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-5-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-5-4/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-5-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-5-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-5-5/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-5-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-5-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-5-6/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-5-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-5-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-5-7/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-5-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-5-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-5-8/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-5-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-5-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-5-9/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-5-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-5-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-6-0/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-6-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-6-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-6-1/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-6-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-6-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-6-2/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-6-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-6-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-6-3/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-6-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-6-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-6-4/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-6-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-6-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-6-5/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-6-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-6-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-6-6/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-6-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-6-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-6-7/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-6-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-6-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-6-8/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-6-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-6-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-6-9/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-6-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-6-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-7-0/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-7-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-7-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-7-1/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-7-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-7-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-7-2/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-7-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-7-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-7-3/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-7-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-7-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-7-4/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-7-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-7-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-7-5/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-7-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-7-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-7-6/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-7-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-7-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-7-7/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-7-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-7-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-7-8/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-7-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L2-7-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-0-1/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-0-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-0-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-0-2/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-0-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-0-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-0-3/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-0-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-0-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-0-4/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-0-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-0-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-0-5/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-0-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-0-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-0-6/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-0-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-0-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-0-7/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-0-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-0-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-0-8/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-0-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-0-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-0-9/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-0-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-0-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-1-0/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-1-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-1-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-1-1/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-1-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-1-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-1-2/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-1-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-1-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-1-3/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-1-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-1-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-1-4/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-1-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-1-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-1-5/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-1-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-1-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-1-6/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-1-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-1-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-1-7/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-1-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-1-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-1-8/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-1-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-1-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-1-9/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-1-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-1-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-2-0/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-2-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-2-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-2-1/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-2-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-2-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-2-2/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-2-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-2-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-2-3/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-2-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-2-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-2-4/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-2-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-2-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-2-5/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-2-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-2-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-2-6/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-2-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-2-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-2-7/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-2-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-2-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-2-8/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-2-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-2-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-2-9/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-2-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-2-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-3-0/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-3-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-3-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-3-1/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-3-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-3-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-3-2/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-3-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-3-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-3-3/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-3-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-3-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-3-4/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-3-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-3-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-3-5/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-3-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-3-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-3-6/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-3-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-3-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-3-7/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-3-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-3-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-3-8/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-3-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-3-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-3-9/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-3-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-3-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-4-0/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-4-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-4-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-4-1/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-4-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-4-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-4-2/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-4-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-4-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-4-3/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-4-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-4-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-4-4/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-4-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-4-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-4-5/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-4-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-4-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-4-6/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-4-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-4-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-4-7/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-4-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-4-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-4-8/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-4-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-4-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-4-9/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-4-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-4-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-5-0/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-5-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-5-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-5-1/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-5-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-5-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-5-2/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-5-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-5-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-5-3/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-5-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-5-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-5-4/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-5-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-5-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-5-5/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-5-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-5-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-5-6/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-5-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-5-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-5-7/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-5-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-5-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-5-8/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-5-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-5-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-5-9/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-5-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-5-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-6-0/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-6-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-6-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-6-1/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-6-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-6-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-6-2/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-6-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-6-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-6-3/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-6-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-6-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-6-4/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-6-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-6-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-6-5/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-6-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-6-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-6-6/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-6-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-6-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-6-7/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-6-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-6-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-6-8/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-6-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-6-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-6-9/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-6-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-6-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-7-0/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-7-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-7-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-7-1/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-7-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-7-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-7-2/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-7-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-7-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-7-3/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-7-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-7-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-7-4/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-7-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-7-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-7-5/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-7-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-7-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-7-6/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-7-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-7-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-7-7/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-7-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-7-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-7-8/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-7-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L3-7-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-0-1/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-0-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-0-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-0-2/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-0-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-0-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-0-3/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-0-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-0-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-0-4/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-0-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-0-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-0-5/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-0-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-0-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-0-6/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-0-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-0-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-0-7/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-0-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-0-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-0-8/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-0-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-0-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-0-9/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-0-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-0-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-1-0/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-1-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-1-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-1-1/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-1-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-1-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-1-2/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-1-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-1-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-1-3/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-1-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-1-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-1-4/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-1-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-1-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-1-5/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-1-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-1-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-1-6/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-1-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-1-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-1-7/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-1-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-1-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-1-8/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-1-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-1-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-1-9/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-1-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-1-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-2-0/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-2-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-2-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-2-1/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-2-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-2-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-2-2/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-2-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-2-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-2-3/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-2-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-2-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-2-4/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-2-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-2-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-2-5/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-2-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-2-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-2-6/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-2-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-2-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-2-7/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-2-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-2-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-2-8/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-2-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-2-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-2-9/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-2-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-2-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-3-0/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-3-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-3-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-3-1/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-3-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-3-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-3-2/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-3-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-3-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-3-3/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-3-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-3-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-3-4/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-3-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-3-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-3-5/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-3-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-3-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-3-6/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-3-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-3-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-3-7/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-3-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-3-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-3-8/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-3-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-3-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-3-9/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-3-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-3-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-4-0/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-4-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-4-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-4-1/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-4-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-4-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-4-2/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-4-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-4-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-4-3/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-4-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-4-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-4-4/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-4-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-4-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-4-5/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-4-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-4-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-4-6/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-4-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-4-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-4-7/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-4-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-4-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-4-8/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-4-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-4-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-4-9/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-4-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-4-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-5-0/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-5-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-5-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-5-1/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-5-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-5-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-5-2/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-5-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-5-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-5-3/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-5-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-5-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-5-4/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-5-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-5-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-5-5/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-5-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-5-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-5-6/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-5-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-5-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-5-7/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-5-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-5-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-5-8/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-5-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-5-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-5-9/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-5-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-5-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-6-0/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-6-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-6-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-6-1/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-6-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-6-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-6-2/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-6-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-6-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-6-3/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-6-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-6-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-6-4/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-6-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-6-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-6-5/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-6-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-6-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-6-6/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-6-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-6-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-6-7/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-6-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-6-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-6-8/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-6-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-6-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-6-9/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-6-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-6-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-7-0/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-7-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-7-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-7-1/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-7-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-7-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-7-2/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-7-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-7-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-7-3/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-7-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-7-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-7-4/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-7-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-7-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-7-5/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-7-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-7-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-7-6/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-7-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-7-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-7-7/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-7-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-7-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-7-8/skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-7-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T187_b19_Skin_PCW23 2 -revcomp | gzip > L4-7-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T187_b19_Skin_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-0-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-0-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-0-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-0-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-0-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-0-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-0-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-0-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-0-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-0-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-0-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-0-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-0-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-0-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-0-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-0-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-0-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-0-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-1-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-1-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-1-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-1-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-1-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-1-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-1-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-1-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-1-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-1-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-1-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-1-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-1-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-1-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-1-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-1-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-1-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-1-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-1-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-1-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-2-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-2-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-2-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-2-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-2-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-2-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-2-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-2-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-2-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-2-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-2-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-2-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-2-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-2-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-2-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-2-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-2-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-2-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-2-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-2-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-3-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-3-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-3-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-3-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-3-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-3-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-3-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-3-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-3-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-3-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-3-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-3-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-3-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-3-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-3-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-3-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-3-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-3-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-3-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-3-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-4-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-4-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-4-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-4-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-4-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-4-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-4-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-4-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-4-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-4-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-4-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-4-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-4-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-4-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-4-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-4-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-4-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-4-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-4-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-4-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-5-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-5-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-5-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-5-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-5-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-5-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-5-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-5-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-5-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-5-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-5-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-5-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-5-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-5-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-5-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-5-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-5-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-5-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-5-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-5-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-6-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-6-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-6-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-6-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-6-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-6-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-6-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-6-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-6-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-6-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-6-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-6-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-6-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-6-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-6-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-6-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-6-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-6-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-6-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-6-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-7-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-7-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-7-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-7-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-7-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-7-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-7-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-7-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-7-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-7-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-7-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-7-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-7-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-7-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-7-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-7-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-7-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-7-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-0-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-0-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-0-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-0-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-0-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-0-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-0-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-0-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-0-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-0-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-0-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-0-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-0-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-0-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-0-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-0-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-0-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-0-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-1-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-1-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-1-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-1-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-1-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-1-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-1-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-1-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-1-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-1-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-1-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-1-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-1-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-1-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-1-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-1-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-1-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-1-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-1-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-1-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-2-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-2-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-2-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-2-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-2-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-2-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-2-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-2-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-2-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-2-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-2-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-2-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-2-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-2-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-2-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-2-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-2-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-2-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-2-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-2-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-3-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-3-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-3-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-3-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-3-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-3-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-3-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-3-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-3-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-3-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-3-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-3-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-3-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-3-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-3-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-3-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-3-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-3-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-3-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-3-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-4-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-4-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-4-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-4-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-4-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-4-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-4-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-4-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-4-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-4-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-4-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-4-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-4-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-4-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-4-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-4-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-4-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-4-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-4-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-4-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-5-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-5-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-5-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-5-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-5-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-5-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-5-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-5-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-5-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-5-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-5-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-5-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-5-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-5-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-5-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-5-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-5-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-5-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-5-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-5-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-6-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-6-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-6-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-6-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-6-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-6-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-6-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-6-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-6-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-6-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-6-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-6-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-6-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-6-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-6-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-6-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-6-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-6-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-6-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-6-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-7-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-7-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-7-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-7-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-7-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-7-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-7-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-7-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-7-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-7-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-7-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-7-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-7-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-7-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-7-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-7-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-7-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-7-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-0-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-0-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-0-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-0-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-0-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-0-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-0-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-0-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-0-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-0-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-0-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-0-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-0-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-0-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-0-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-0-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-0-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-0-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-1-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-1-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-1-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-1-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-1-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-1-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-1-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-1-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-1-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-1-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-1-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-1-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-1-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-1-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-1-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-1-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-1-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-1-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-1-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-1-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-2-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-2-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-2-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-2-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-2-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-2-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-2-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-2-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-2-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-2-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-2-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-2-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-2-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-2-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-2-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-2-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-2-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-2-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-2-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-2-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-3-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-3-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-3-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-3-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-3-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-3-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-3-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-3-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-3-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-3-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-3-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-3-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-3-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-3-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-3-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-3-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-3-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-3-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-3-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-3-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-4-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-4-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-4-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-4-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-4-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-4-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-4-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-4-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-4-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-4-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-4-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-4-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-4-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-4-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-4-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-4-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-4-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-4-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-4-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-4-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-5-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-5-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-5-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-5-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-5-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-5-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-5-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-5-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-5-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-5-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-5-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-5-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-5-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-5-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-5-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-5-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-5-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-5-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-5-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-5-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-6-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-6-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-6-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-6-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-6-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-6-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-6-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-6-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-6-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-6-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-6-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-6-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-6-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-6-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-6-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-6-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-6-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-6-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-6-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-6-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-7-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-7-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-7-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-7-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-7-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-7-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-7-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-7-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-7-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-7-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-7-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-7-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-7-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-7-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-7-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-7-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-7-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-7-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-0-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-0-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-0-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-0-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-0-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-0-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-0-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-0-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-0-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-0-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-0-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-0-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-0-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-0-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-0-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-0-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-0-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-0-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-1-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-1-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-1-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-1-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-1-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-1-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-1-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-1-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-1-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-1-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-1-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-1-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-1-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-1-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-1-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-1-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-1-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-1-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-1-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-1-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-2-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-2-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-2-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-2-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-2-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-2-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-2-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-2-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-2-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-2-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-2-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-2-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-2-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-2-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-2-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-2-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-2-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-2-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-2-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-2-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-3-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-3-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-3-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-3-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-3-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-3-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-3-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-3-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-3-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-3-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-3-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-3-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-3-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-3-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-3-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-3-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-3-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-3-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-3-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-3-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-4-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-4-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-4-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-4-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-4-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-4-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-4-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-4-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-4-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-4-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-4-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-4-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-4-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-4-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-4-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-4-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-4-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-4-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-4-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-4-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-5-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-5-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-5-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-5-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-5-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-5-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-5-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-5-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-5-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-5-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-5-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-5-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-5-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-5-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-5-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-5-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-5-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-5-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-5-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-5-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-6-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-6-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-6-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-6-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-6-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-6-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-6-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-6-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-6-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-6-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-6-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-6-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-6-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-6-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-6-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-6-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-6-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-6-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-6-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-6-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-7-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-7-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-7-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-7-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-7-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-7-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-7-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-7-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-7-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-7-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-7-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-7-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-7-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-7-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-7-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-7-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-7-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-7-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-0-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-0-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-0-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-0-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-0-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-0-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-0-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-0-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-0-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-0-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-0-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-0-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-0-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-0-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-0-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-0-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-0-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-0-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-1-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-1-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-1-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-1-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-1-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-1-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-1-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-1-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-1-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-1-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-1-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-1-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-1-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-1-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-1-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-1-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-1-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-1-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-1-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-1-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-2-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-2-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-2-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-2-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-2-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-2-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-2-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-2-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-2-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-2-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-2-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-2-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-2-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-2-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-2-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-2-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-2-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-2-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-2-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-2-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-3-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-3-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-3-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-3-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-3-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-3-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-3-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-3-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-3-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-3-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-3-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-3-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-3-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-3-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-3-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-3-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-3-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-3-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-3-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-3-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-4-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-4-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-4-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-4-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-4-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-4-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-4-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-4-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-4-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-4-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-4-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-4-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-4-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-4-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-4-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-4-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-4-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-4-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-4-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-4-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-5-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-5-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-5-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-5-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-5-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-5-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-5-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-5-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-5-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-5-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-5-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-5-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-5-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-5-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-5-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-5-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-5-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-5-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-5-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-5-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-6-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-6-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-6-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-6-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-6-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-6-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-6-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-6-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-6-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-6-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-6-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-6-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-6-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-6-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-6-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-6-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-6-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-6-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-6-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-6-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-7-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-7-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-7-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-7-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-7-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-7-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-7-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-7-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-7-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-7-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-7-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-7-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-7-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-7-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-7-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-7-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-7-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L1-7-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-0-1/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-0-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-0-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-0-2/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-0-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-0-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-0-3/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-0-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-0-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-0-4/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-0-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-0-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-0-5/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-0-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-0-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-0-6/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-0-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-0-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-0-7/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-0-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-0-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-0-8/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-0-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-0-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-0-9/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-0-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-0-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-1-0/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-1-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-1-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-1-1/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-1-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-1-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-1-2/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-1-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-1-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-1-3/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-1-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-1-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-1-4/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-1-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-1-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-1-5/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-1-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-1-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-1-6/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-1-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-1-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-1-7/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-1-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-1-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-1-8/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-1-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-1-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-1-9/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-1-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-1-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-2-0/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-2-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-2-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-2-1/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-2-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-2-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-2-2/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-2-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-2-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-2-3/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-2-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-2-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-2-4/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-2-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-2-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-2-5/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-2-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-2-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-2-6/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-2-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-2-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-2-7/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-2-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-2-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-2-8/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-2-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-2-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-2-9/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-2-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-2-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-3-0/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-3-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-3-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-3-1/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-3-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-3-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-3-2/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-3-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-3-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-3-3/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-3-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-3-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-3-4/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-3-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-3-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-3-5/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-3-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-3-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-3-6/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-3-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-3-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-3-7/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-3-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-3-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-3-8/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-3-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-3-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-3-9/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-3-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-3-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-4-0/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-4-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-4-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-4-1/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-4-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-4-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-4-2/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-4-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-4-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-4-3/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-4-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-4-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-4-4/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-4-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-4-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-4-5/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-4-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-4-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-4-6/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-4-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-4-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-4-7/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-4-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-4-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-4-8/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-4-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-4-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-4-9/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-4-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-4-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-5-0/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-5-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-5-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-5-1/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-5-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-5-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-5-2/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-5-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-5-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-5-3/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-5-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-5-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-5-4/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-5-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-5-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-5-5/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-5-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-5-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-5-6/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-5-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-5-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-5-7/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-5-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-5-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-5-8/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-5-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-5-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-5-9/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-5-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-5-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-6-0/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-6-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-6-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-6-1/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-6-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-6-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-6-2/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-6-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-6-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-6-3/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-6-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-6-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-6-4/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-6-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-6-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-6-5/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-6-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-6-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-6-6/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-6-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-6-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-6-7/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-6-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-6-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-6-8/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-6-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-6-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-6-9/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-6-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-6-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-7-0/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-7-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-7-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-7-1/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-7-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-7-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-7-2/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-7-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-7-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-7-3/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-7-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-7-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-7-4/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-7-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-7-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-7-5/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-7-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-7-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-7-6/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-7-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-7-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-7-7/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-7-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-7-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-7-8/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-7-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L2-7-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-0-1/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-0-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-0-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-0-2/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-0-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-0-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-0-3/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-0-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-0-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-0-4/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-0-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-0-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-0-5/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-0-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-0-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-0-6/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-0-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-0-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-0-7/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-0-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-0-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-0-8/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-0-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-0-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-0-9/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-0-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-0-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-1-0/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-1-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-1-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-1-1/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-1-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-1-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-1-2/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-1-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-1-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-1-3/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-1-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-1-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-1-4/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-1-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-1-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-1-5/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-1-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-1-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-1-6/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-1-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-1-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-1-7/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-1-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-1-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-1-8/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-1-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-1-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-1-9/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-1-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-1-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-2-0/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-2-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-2-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-2-1/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-2-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-2-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-2-2/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-2-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-2-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-2-3/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-2-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-2-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-2-4/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-2-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-2-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-2-5/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-2-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-2-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-2-6/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-2-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-2-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-2-7/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-2-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-2-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-2-8/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-2-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-2-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-2-9/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-2-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-2-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-3-0/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-3-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-3-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-3-1/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-3-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-3-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-3-2/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-3-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-3-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-3-3/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-3-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-3-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-3-4/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-3-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-3-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-3-5/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-3-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-3-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-3-6/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-3-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-3-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-3-7/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-3-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-3-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-3-8/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-3-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-3-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-3-9/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-3-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-3-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-4-0/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-4-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-4-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-4-1/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-4-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-4-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-4-2/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-4-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-4-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-4-3/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-4-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-4-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-4-4/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-4-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-4-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-4-5/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-4-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-4-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-4-6/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-4-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-4-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-4-7/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-4-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-4-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-4-8/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-4-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-4-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-4-9/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-4-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-4-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-5-0/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-5-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-5-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-5-1/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-5-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-5-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-5-2/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-5-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-5-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-5-3/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-5-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-5-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-5-4/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-5-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-5-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-5-5/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-5-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-5-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-5-6/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-5-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-5-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-5-7/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-5-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-5-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-5-8/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-5-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-5-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-5-9/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-5-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-5-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-6-0/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-6-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-6-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-6-1/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-6-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-6-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-6-2/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-6-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-6-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-6-3/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-6-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-6-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-6-4/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-6-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-6-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-6-5/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-6-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-6-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-6-6/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-6-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-6-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-6-7/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-6-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-6-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-6-8/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-6-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-6-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-6-9/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-6-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-6-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-7-0/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-7-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-7-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-7-1/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-7-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-7-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-7-2/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-7-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-7-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-7-3/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-7-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-7-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-7-4/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-7-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-7-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-7-5/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-7-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-7-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-7-6/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-7-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-7-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-7-7/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-7-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-7-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-7-8/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-7-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L3-7-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-0-1/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-0-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-0-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-0-2/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-0-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-0-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-0-3/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-0-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-0-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-0-4/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-0-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-0-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-0-5/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-0-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-0-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-0-6/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-0-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-0-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-0-7/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-0-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-0-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-0-8/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-0-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-0-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-0-9/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-0-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-0-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-1-0/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-1-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-1-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-1-1/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-1-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-1-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-1-2/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-1-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-1-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-1-3/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-1-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-1-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-1-4/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-1-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-1-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-1-5/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-1-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-1-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-1-6/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-1-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-1-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-1-7/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-1-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-1-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-1-8/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-1-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-1-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-1-9/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-1-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-1-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-2-0/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-2-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-2-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-2-1/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-2-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-2-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-2-2/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-2-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-2-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-2-3/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-2-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-2-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-2-4/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-2-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-2-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-2-5/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-2-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-2-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-2-6/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-2-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-2-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-2-7/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-2-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-2-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-2-8/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-2-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-2-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-2-9/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-2-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-2-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-3-0/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-3-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-3-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-3-1/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-3-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-3-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-3-2/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-3-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-3-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-3-3/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-3-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-3-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-3-4/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-3-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-3-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-3-5/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-3-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-3-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-3-6/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-3-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-3-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-3-7/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-3-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-3-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-3-8/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-3-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-3-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-3-9/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-3-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-3-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-4-0/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-4-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-4-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-4-1/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-4-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-4-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-4-2/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-4-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-4-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-4-3/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-4-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-4-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-4-4/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-4-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-4-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-4-5/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-4-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-4-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-4-6/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-4-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-4-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-4-7/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-4-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-4-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-4-8/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-4-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-4-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-4-9/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-4-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-4-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-5-0/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-5-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-5-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-5-1/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-5-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-5-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-5-2/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-5-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-5-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-5-3/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-5-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-5-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-5-4/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-5-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-5-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-5-5/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-5-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-5-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-5-6/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-5-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-5-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-5-7/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-5-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-5-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-5-8/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-5-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-5-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-5-9/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-5-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-5-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-6-0/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-6-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-6-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-6-1/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-6-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-6-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-6-2/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-6-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-6-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-6-3/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-6-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-6-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-6-4/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-6-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-6-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-6-5/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-6-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-6-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-6-6/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-6-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-6-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-6-7/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-6-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-6-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-6-8/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-6-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-6-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-6-9/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-6-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-6-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-7-0/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-7-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-7-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-7-1/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-7-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-7-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-7-2/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-7-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-7-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-7-3/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-7-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-7-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-7-4/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-7-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-7-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-7-5/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-7-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-7-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-7-6/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-7-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-7-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-7-7/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-7-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-7-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-7-8/skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-7-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T299_b19_Scalp_PCW21 2 -revcomp | gzip > L4-7-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T299_b19_Scalp_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-0-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-1-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-2-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-3-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-4-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-5-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-6-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L1-7-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-1/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-2/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-3/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-4/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-5/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-6/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-7/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-8/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-9/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-0-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-0/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-1/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-2/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-3/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-4/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-5/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-6/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-7/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-8/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-9/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-1-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-0/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-1/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-2/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-3/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-4/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-5/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-6/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-7/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-8/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-9/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-2-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-0/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-1/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-2/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-3/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-4/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-5/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-6/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-7/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-8/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-9/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-3-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-0/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-1/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-2/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-3/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-4/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-5/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-6/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-7/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-8/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-9/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-4-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-0/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-1/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-2/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-3/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-4/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-5/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-6/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-7/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-8/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-9/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-5-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-0/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-1/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-2/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-3/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-4/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-5/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-6/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-7/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-8/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-9/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-6-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-0/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-1/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-2/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-3/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-4/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-5/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-6/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-7/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-8/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L2-7-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-1/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-2/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-3/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-4/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-5/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-6/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-7/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-8/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-9/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-0-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-0/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-1/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-2/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-3/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-4/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-5/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-6/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-7/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-8/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-9/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-1-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-0/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-1/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-2/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-3/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-4/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-5/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-6/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-7/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-8/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-9/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-2-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-0/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-1/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-2/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-3/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-4/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-5/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-6/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-7/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-8/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-9/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-3-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-0/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-1/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-2/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-3/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-4/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-5/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-6/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-7/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-8/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-9/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-4-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-0/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-1/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-2/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-3/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-4/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-5/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-6/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-7/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-8/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-9/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-5-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-0/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-1/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-2/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-3/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-4/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-5/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-6/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-7/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-8/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-9/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-6-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-0/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-1/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-2/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-3/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-4/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-5/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-6/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-7/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-8/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L3-7-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-1/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-2/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-3/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-4/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-5/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-6/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-7/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-8/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-9/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-0-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-0/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-1/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-2/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-3/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-4/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-5/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-6/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-7/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-8/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-9/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-1-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-0/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-1/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-2/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-3/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-4/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-5/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-6/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-7/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-8/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-9/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-2-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-0/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-1/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-2/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-3/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-4/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-5/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-6/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-7/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-8/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-9/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-3-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-0/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-1/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-2/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-3/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-4/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-5/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-6/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-7/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-8/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-9/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-4-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-0/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-1/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-2/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-3/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-4/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-5/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-6/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-7/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-8/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-9/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-5-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-0/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-1/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-2/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-3/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-4/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-5/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-6/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-7/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-8/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-9/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-6-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-0/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-1/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-2/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-3/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-4/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-5/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-6/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-7/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-8/skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T408S_b19_Skin_PCW19 2 -revcomp | gzip > L4-7-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T408S_b19_Skin_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-0-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-0-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-0-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-0-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-0-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-0-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-0-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-0-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-0-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-0-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-0-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-0-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-0-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-0-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-0-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-0-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-0-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-0-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-1-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-1-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-1-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-1-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-1-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-1-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-1-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-1-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-1-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-1-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-1-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-1-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-1-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-1-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-1-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-1-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-1-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-1-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-1-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-1-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-2-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-2-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-2-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-2-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-2-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-2-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-2-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-2-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-2-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-2-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-2-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-2-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-2-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-2-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-2-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-2-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-2-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-2-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-2-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-2-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-3-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-3-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-3-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-3-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-3-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-3-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-3-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-3-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-3-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-3-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-3-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-3-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-3-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-3-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-3-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-3-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-3-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-3-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-3-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-3-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-4-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-4-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-4-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-4-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-4-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-4-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-4-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-4-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-4-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-4-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-4-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-4-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-4-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-4-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-4-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-4-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-4-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-4-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-4-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-4-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-5-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-5-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-5-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-5-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-5-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-5-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-5-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-5-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-5-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-5-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-5-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-5-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-5-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-5-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-5-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-5-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-5-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-5-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-5-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-5-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-6-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-6-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-6-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-6-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-6-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-6-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-6-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-6-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-6-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-6-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-6-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-6-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-6-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-6-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-6-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-6-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-6-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-6-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-6-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-6-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-7-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-7-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-7-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-7-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-7-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-7-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-7-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-7-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-7-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-7-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-7-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-7-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-7-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-7-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-7-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-7-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-7-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-7-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-0-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-0-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-0-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-0-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-0-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-0-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-0-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-0-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-0-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-0-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-0-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-0-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-0-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-0-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-0-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-0-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-0-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-0-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-1-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-1-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-1-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-1-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-1-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-1-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-1-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-1-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-1-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-1-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-1-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-1-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-1-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-1-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-1-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-1-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-1-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-1-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-1-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-1-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-2-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-2-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-2-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-2-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-2-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-2-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-2-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-2-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-2-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-2-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-2-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-2-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-2-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-2-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-2-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-2-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-2-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-2-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-2-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-2-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-3-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-3-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-3-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-3-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-3-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-3-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-3-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-3-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-3-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-3-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-3-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-3-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-3-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-3-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-3-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-3-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-3-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-3-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-3-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-3-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-4-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-4-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-4-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-4-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-4-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-4-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-4-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-4-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-4-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-4-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-4-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-4-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-4-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-4-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-4-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-4-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-4-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-4-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-4-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-4-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-5-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-5-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-5-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-5-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-5-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-5-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-5-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-5-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-5-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-5-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-5-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-5-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-5-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-5-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-5-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-5-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-5-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-5-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-5-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-5-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-6-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-6-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-6-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-6-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-6-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-6-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-6-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-6-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-6-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-6-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-6-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-6-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-6-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-6-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-6-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-6-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-6-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-6-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-6-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-6-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-7-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-7-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-7-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-7-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-7-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-7-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-7-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-7-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-7-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-7-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-7-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-7-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-7-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-7-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-7-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-7-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-7-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-7-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-0-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-0-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-0-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-0-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-0-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-0-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-0-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-0-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-0-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-0-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-0-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-0-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-0-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-0-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-0-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-0-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-0-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-0-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-1-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-1-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-1-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-1-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-1-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-1-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-1-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-1-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-1-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-1-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-1-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-1-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-1-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-1-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-1-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-1-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-1-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-1-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-1-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-1-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-2-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-2-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-2-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-2-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-2-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-2-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-2-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-2-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-2-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-2-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-2-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-2-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-2-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-2-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-2-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-2-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-2-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-2-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-2-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-2-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-3-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-3-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-3-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-3-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-3-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-3-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-3-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-3-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-3-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-3-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-3-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-3-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-3-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-3-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-3-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-3-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-3-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-3-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-3-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-3-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-4-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-4-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-4-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-4-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-4-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-4-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-4-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-4-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-4-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-4-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-4-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-4-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-4-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-4-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-4-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-4-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-4-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-4-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-4-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-4-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-5-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-5-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-5-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-5-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-5-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-5-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-5-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-5-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-5-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-5-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-5-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-5-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-5-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-5-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-5-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-5-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-5-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-5-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-5-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-5-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-6-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-6-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-6-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-6-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-6-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-6-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-6-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-6-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-6-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-6-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-6-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-6-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-6-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-6-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-6-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-6-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-6-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-6-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-6-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-6-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-7-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-7-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-7-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-7-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-7-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-7-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-7-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-7-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-7-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-7-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-7-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-7-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-7-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-7-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-7-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-7-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-7-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-7-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-0-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-0-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-0-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-0-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-0-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-0-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-0-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-0-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-0-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-0-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-0-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-0-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-0-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-0-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-0-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-0-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-0-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-0-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-1-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-1-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-1-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-1-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-1-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-1-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-1-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-1-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-1-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-1-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-1-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-1-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-1-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-1-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-1-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-1-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-1-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-1-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-1-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-1-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-2-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-2-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-2-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-2-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-2-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-2-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-2-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-2-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-2-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-2-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-2-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-2-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-2-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-2-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-2-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-2-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-2-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-2-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-2-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-2-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-3-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-3-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-3-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-3-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-3-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-3-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-3-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-3-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-3-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-3-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-3-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-3-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-3-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-3-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-3-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-3-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-3-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-3-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-3-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-3-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-4-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-4-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-4-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-4-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-4-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-4-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-4-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-4-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-4-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-4-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-4-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-4-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-4-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-4-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-4-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-4-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-4-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-4-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-4-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-4-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-5-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-5-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-5-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-5-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-5-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-5-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-5-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-5-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-5-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-5-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-5-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-5-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-5-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-5-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-5-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-5-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-5-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-5-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-5-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-5-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-6-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-6-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-6-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-6-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-6-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-6-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-6-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-6-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-6-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-6-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-6-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-6-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-6-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-6-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-6-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-6-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-6-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-6-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-6-9/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-6-9/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-7-0/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-7-0/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-7-1/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-7-1/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-7-2/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-7-2/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-7-3/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-7-3/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-7-4/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-7-4/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-7-5/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-7-5/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-7-6/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-7-6/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-7-7/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-7-7/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL313_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-7-8/SL313_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL314_b19_RNA_skinredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-7-8/SL314_b19_RNA_skinredo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-0-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-0-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-0-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-0-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-0-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-0-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-0-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-0-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-0-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-0-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-0-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-0-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-0-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-0-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-0-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-0-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-0-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-0-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-1-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-1-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-1-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-1-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-1-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-1-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-1-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-1-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-1-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-1-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-1-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-1-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-1-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-1-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-1-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-1-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-1-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-1-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-1-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-1-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-2-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-2-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-2-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-2-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-2-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-2-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-2-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-2-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-2-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-2-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-2-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-2-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-2-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-2-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-2-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-2-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-2-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-2-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-2-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-2-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-3-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-3-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-3-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-3-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-3-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-3-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-3-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-3-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-3-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-3-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-3-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-3-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-3-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-3-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-3-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-3-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-3-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-3-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-3-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-3-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-4-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-4-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-4-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-4-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-4-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-4-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-4-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-4-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-4-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-4-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-4-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-4-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-4-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-4-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-4-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-4-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-4-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-4-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-4-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-4-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-5-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-5-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-5-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-5-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-5-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-5-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-5-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-5-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-5-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-5-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-5-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-5-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-5-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-5-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-5-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-5-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-5-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-5-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-5-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-5-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-6-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-6-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-6-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-6-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-6-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-6-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-6-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-6-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-6-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-6-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-6-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-6-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-6-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-6-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-6-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-6-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-6-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-6-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-6-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-6-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-7-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-7-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-7-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-7-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-7-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-7-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-7-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-7-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-7-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-7-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-7-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-7-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-7-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-7-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-7-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-7-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-7-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L1-7-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-0-1/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-0-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-0-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-0-2/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-0-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-0-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-0-3/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-0-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-0-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-0-4/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-0-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-0-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-0-5/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-0-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-0-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-0-6/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-0-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-0-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-0-7/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-0-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-0-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-0-8/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-0-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-0-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-0-9/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-0-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-0-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-1-0/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-1-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-1-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-1-1/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-1-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-1-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-1-2/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-1-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-1-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-1-3/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-1-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-1-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-1-4/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-1-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-1-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-1-5/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-1-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-1-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-1-6/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-1-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-1-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-1-7/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-1-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-1-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-1-8/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-1-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-1-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-1-9/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-1-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-1-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-2-0/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-2-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-2-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-2-1/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-2-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-2-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-2-2/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-2-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-2-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-2-3/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-2-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-2-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-2-4/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-2-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-2-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-2-5/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-2-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-2-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-2-6/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-2-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-2-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-2-7/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-2-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-2-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-2-8/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-2-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-2-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-2-9/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-2-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-2-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-3-0/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-3-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-3-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-3-1/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-3-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-3-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-3-2/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-3-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-3-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-3-3/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-3-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-3-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-3-4/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-3-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-3-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-3-5/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-3-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-3-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-3-6/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-3-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-3-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-3-7/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-3-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-3-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-3-8/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-3-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-3-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-3-9/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-3-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-3-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-4-0/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-4-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-4-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-4-1/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-4-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-4-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-4-2/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-4-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-4-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-4-3/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-4-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-4-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-4-4/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-4-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-4-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-4-5/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-4-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-4-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-4-6/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-4-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-4-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-4-7/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-4-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-4-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-4-8/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-4-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-4-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-4-9/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-4-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-4-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-5-0/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-5-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-5-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-5-1/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-5-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-5-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-5-2/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-5-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-5-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-5-3/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-5-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-5-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-5-4/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-5-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-5-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-5-5/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-5-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-5-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-5-6/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-5-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-5-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-5-7/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-5-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-5-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-5-8/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-5-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-5-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-5-9/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-5-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-5-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-6-0/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-6-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-6-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-6-1/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-6-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-6-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-6-2/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-6-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-6-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-6-3/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-6-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-6-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-6-4/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-6-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-6-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-6-5/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-6-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-6-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-6-6/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-6-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-6-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-6-7/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-6-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-6-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-6-8/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-6-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-6-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-6-9/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-6-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-6-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-7-0/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-7-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-7-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-7-1/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-7-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-7-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-7-2/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-7-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-7-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-7-3/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-7-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-7-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-7-4/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-7-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-7-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-7-5/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-7-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-7-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-7-6/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-7-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-7-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-7-7/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-7-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-7-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-7-8/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-7-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L2-7-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-0-1/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-0-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-0-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-0-2/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-0-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-0-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-0-3/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-0-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-0-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-0-4/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-0-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-0-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-0-5/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-0-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-0-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-0-6/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-0-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-0-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-0-7/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-0-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-0-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-0-8/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-0-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-0-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-0-9/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-0-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-0-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-1-0/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-1-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-1-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-1-1/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-1-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-1-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-1-2/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-1-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-1-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-1-3/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-1-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-1-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-1-4/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-1-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-1-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-1-5/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-1-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-1-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-1-6/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-1-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-1-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-1-7/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-1-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-1-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-1-8/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-1-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-1-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-1-9/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-1-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-1-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-2-0/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-2-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-2-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-2-1/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-2-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-2-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-2-2/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-2-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-2-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-2-3/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-2-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-2-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-2-4/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-2-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-2-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-2-5/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-2-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-2-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-2-6/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-2-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-2-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-2-7/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-2-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-2-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-2-8/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-2-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-2-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-2-9/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-2-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-2-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-3-0/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-3-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-3-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-3-1/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-3-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-3-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-3-2/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-3-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-3-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-3-3/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-3-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-3-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-3-4/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-3-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-3-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-3-5/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-3-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-3-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-3-6/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-3-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-3-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-3-7/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-3-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-3-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-3-8/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-3-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-3-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-3-9/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-3-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-3-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-4-0/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-4-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-4-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-4-1/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-4-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-4-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-4-2/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-4-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-4-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-4-3/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-4-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-4-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-4-4/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-4-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-4-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-4-5/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-4-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-4-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-4-6/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-4-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-4-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-4-7/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-4-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-4-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-4-8/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-4-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-4-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-4-9/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-4-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-4-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-5-0/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-5-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-5-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-5-1/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-5-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-5-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-5-2/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-5-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-5-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-5-3/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-5-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-5-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-5-4/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-5-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-5-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-5-5/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-5-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-5-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-5-6/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-5-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-5-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-5-7/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-5-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-5-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-5-8/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-5-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-5-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-5-9/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-5-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-5-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-6-0/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-6-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-6-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-6-1/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-6-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-6-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-6-2/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-6-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-6-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-6-3/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-6-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-6-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-6-4/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-6-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-6-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-6-5/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-6-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-6-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-6-6/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-6-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-6-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-6-7/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-6-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-6-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-6-8/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-6-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-6-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-6-9/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-6-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-6-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-7-0/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-7-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-7-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-7-1/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-7-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-7-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-7-2/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-7-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-7-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-7-3/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-7-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-7-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-7-4/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-7-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-7-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-7-5/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-7-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-7-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-7-6/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-7-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-7-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-7-7/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-7-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-7-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-7-8/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-7-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L3-7-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-0-1/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-0-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-0-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-0-2/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-0-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-0-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-0-3/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-0-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-0-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-0-4/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-0-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-0-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-0-5/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-0-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-0-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-0-6/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-0-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-0-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-0-7/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-0-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-0-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-0-8/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-0-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-0-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-0-9/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-0-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-0-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-1-0/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-1-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-1-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-1-1/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-1-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-1-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-1-2/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-1-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-1-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-1-3/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-1-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-1-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-1-4/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-1-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-1-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-1-5/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-1-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-1-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-1-6/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-1-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-1-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-1-7/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-1-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-1-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-1-8/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-1-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-1-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-1-9/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-1-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-1-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-2-0/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-2-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-2-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-2-1/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-2-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-2-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-2-2/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-2-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-2-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-2-3/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-2-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-2-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-2-4/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-2-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-2-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-2-5/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-2-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-2-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-2-6/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-2-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-2-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-2-7/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-2-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-2-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-2-8/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-2-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-2-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-2-9/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-2-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-2-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-3-0/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-3-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-3-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-3-1/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-3-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-3-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-3-2/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-3-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-3-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-3-3/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-3-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-3-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-3-4/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-3-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-3-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-3-5/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-3-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-3-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-3-6/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-3-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-3-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-3-7/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-3-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-3-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-3-8/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-3-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-3-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-3-9/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-3-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-3-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-4-0/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-4-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-4-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-4-1/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-4-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-4-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-4-2/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-4-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-4-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-4-3/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-4-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-4-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-4-4/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-4-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-4-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-4-5/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-4-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-4-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-4-6/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-4-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-4-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-4-7/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-4-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-4-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-4-8/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-4-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-4-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-4-9/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-4-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-4-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-5-0/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-5-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-5-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-5-1/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-5-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-5-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-5-2/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-5-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-5-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-5-3/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-5-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-5-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-5-4/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-5-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-5-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-5-5/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-5-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-5-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-5-6/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-5-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-5-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-5-7/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-5-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-5-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-5-8/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-5-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-5-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-5-9/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-5-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-5-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-6-0/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-6-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-6-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-6-1/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-6-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-6-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-6-2/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-6-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-6-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-6-3/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-6-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-6-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-6-4/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-6-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-6-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-6-5/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-6-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-6-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-6-6/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-6-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-6-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-6-7/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-6-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-6-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-6-8/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-6-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-6-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-6-9/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-6-9/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-6-9/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-7-0/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-7-0/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-7-0/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-7-1/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-7-1/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-7-1/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-7-2/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-7-2/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-7-2/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-7-3/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-7-3/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-7-3/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-7-4/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-7-4/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-7-4/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-7-5/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-7-5/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-7-5/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-7-6/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-7-6/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-7-6/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-7-7/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-7-7/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-7-7/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-7-8/skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL297_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-7-8/SL297_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL298_skin_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T45_b19_Skin_PCW17 2 -revcomp | gzip > L4-7-8/SL298_skin_atac_redo.barcodes_annotated.barcode_T45_b19_Skin_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-0-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-0-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-0-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-0-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-0-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-0-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-0-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-0-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-0-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-0-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-0-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-0-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-0-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-0-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-0-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-0-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-0-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-0-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-1-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-1-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-1-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-1-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-1-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-1-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-1-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-1-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-1-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-1-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-1-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-1-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-1-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-1-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-1-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-1-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-1-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-1-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-1-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-1-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-2-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-2-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-2-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-2-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-2-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-2-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-2-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-2-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-2-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-2-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-2-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-2-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-2-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-2-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-2-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-2-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-2-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-2-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-2-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-2-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-3-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-3-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-3-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-3-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-3-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-3-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-3-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-3-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-3-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-3-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-3-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-3-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-3-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-3-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-3-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-3-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-3-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-3-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-3-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-3-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-4-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-4-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-4-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-4-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-4-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-4-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-4-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-4-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-4-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-4-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-4-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-4-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-4-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-4-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-4-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-4-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-4-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-4-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-4-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-4-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-5-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-5-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-5-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-5-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-5-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-5-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-5-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-5-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-5-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-5-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-5-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-5-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-5-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-5-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-5-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-5-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-5-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-5-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-5-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-5-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-6-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-6-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-6-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-6-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-6-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-6-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-6-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-6-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-6-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-6-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-6-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-6-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-6-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-6-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-6-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-6-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-6-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-6-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-6-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-6-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-7-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-7-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-7-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-7-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-7-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-7-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-7-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-7-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-7-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-7-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-7-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-7-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-7-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-7-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-7-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-7-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-7-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-7-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-0-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-0-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-0-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-0-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-0-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-0-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-0-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-0-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-0-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-0-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-0-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-0-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-0-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-0-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-0-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-0-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-0-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-0-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-1-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-1-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-1-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-1-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-1-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-1-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-1-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-1-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-1-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-1-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-1-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-1-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-1-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-1-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-1-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-1-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-1-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-1-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-1-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-1-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-2-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-2-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-2-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-2-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-2-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-2-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-2-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-2-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-2-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-2-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-2-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-2-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-2-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-2-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-2-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-2-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-2-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-2-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-2-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-2-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-3-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-3-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-3-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-3-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-3-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-3-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-3-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-3-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-3-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-3-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-3-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-3-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-3-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-3-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-3-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-3-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-3-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-3-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-3-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-3-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-4-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-4-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-4-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-4-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-4-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-4-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-4-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-4-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-4-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-4-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-4-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-4-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-4-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-4-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-4-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-4-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-4-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-4-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-4-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-4-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-5-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-5-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-5-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-5-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-5-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-5-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-5-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-5-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-5-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-5-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-5-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-5-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-5-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-5-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-5-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-5-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-5-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-5-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-5-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-5-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-6-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-6-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-6-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-6-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-6-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-6-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-6-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-6-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-6-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-6-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-6-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-6-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-6-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-6-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-6-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-6-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-6-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-6-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-6-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-6-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-7-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-7-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-7-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-7-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-7-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-7-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-7-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-7-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-7-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-7-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-7-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-7-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-7-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-7-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-7-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-7-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-7-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-7-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-0-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-0-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-0-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-0-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-0-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-0-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-0-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-0-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-0-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-0-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-0-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-0-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-0-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-0-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-0-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-0-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-0-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-0-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-1-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-1-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-1-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-1-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-1-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-1-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-1-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-1-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-1-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-1-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-1-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-1-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-1-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-1-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-1-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-1-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-1-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-1-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-1-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-1-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-2-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-2-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-2-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-2-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-2-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-2-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-2-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-2-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-2-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-2-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-2-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-2-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-2-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-2-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-2-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-2-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-2-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-2-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-2-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-2-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-3-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-3-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-3-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-3-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-3-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-3-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-3-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-3-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-3-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-3-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-3-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-3-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-3-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-3-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-3-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-3-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-3-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-3-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-3-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-3-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-4-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-4-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-4-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-4-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-4-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-4-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-4-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-4-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-4-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-4-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-4-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-4-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-4-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-4-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-4-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-4-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-4-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-4-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-4-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-4-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-5-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-5-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-5-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-5-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-5-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-5-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-5-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-5-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-5-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-5-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-5-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-5-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-5-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-5-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-5-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-5-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-5-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-5-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-5-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-5-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-6-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-6-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-6-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-6-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-6-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-6-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-6-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-6-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-6-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-6-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-6-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-6-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-6-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-6-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-6-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-6-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-6-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-6-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-6-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-6-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-7-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-7-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-7-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-7-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-7-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-7-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-7-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-7-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-7-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-7-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-7-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-7-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-7-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-7-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-7-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-7-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-7-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-7-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-0-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-0-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-0-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-0-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-0-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-0-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-0-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-0-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-0-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-0-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-0-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-0-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-0-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-0-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-0-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-0-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-0-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-0-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-1-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-1-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-1-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-1-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-1-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-1-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-1-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-1-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-1-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-1-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-1-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-1-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-1-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-1-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-1-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-1-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-1-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-1-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-1-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-1-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-2-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-2-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-2-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-2-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-2-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-2-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-2-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-2-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-2-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-2-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-2-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-2-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-2-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-2-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-2-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-2-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-2-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-2-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-2-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-2-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-3-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-3-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-3-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-3-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-3-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-3-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-3-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-3-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-3-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-3-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-3-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-3-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-3-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-3-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-3-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-3-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-3-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-3-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-3-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-3-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-4-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-4-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-4-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-4-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-4-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-4-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-4-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-4-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-4-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-4-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-4-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-4-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-4-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-4-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-4-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-4-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-4-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-4-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-4-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-4-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-5-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-5-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-5-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-5-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-5-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-5-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-5-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-5-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-5-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-5-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-5-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-5-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-5-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-5-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-5-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-5-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-5-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-5-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-5-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-5-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-6-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-6-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-6-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-6-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-6-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-6-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-6-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-6-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-6-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-6-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-6-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-6-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-6-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-6-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-6-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-6-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-6-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-6-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-6-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-6-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-7-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-7-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-7-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-7-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-7-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-7-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-7-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-7-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-7-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-7-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-7-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-7-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-7-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-7-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-7-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-7-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-7-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-7-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-0-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-0-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-0-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-0-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-0-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-0-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-0-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-0-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-0-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-0-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-0-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-0-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-0-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-0-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-0-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-0-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-0-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-0-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-1-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-1-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-1-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-1-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-1-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-1-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-1-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-1-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-1-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-1-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-1-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-1-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-1-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-1-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-1-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-1-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-1-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-1-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-1-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-1-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-2-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-2-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-2-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-2-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-2-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-2-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-2-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-2-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-2-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-2-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-2-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-2-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-2-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-2-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-2-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-2-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-2-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-2-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-2-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-2-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-3-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-3-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-3-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-3-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-3-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-3-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-3-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-3-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-3-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-3-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-3-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-3-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-3-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-3-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-3-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-3-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-3-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-3-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-3-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-3-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-4-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-4-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-4-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-4-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-4-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-4-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-4-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-4-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-4-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-4-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-4-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-4-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-4-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-4-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-4-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-4-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-4-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-4-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-4-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-4-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-5-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-5-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-5-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-5-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-5-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-5-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-5-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-5-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-5-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-5-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-5-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-5-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-5-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-5-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-5-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-5-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-5-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-5-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-5-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-5-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-6-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-6-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-6-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-6-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-6-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-6-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-6-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-6-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-6-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-6-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-6-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-6-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-6-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-6-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-6-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-6-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-6-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-6-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-6-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-6-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-7-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-7-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-7-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-7-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-7-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-7-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-7-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-7-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-7-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-7-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-7-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-7-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-7-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-7-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-7-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-7-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-7-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L1-7-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-0-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-0-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-0-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-0-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-0-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-0-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-0-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-0-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-0-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-0-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-0-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-0-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-0-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-0-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-0-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-0-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-0-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-0-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-1-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-1-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-1-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-1-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-1-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-1-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-1-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-1-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-1-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-1-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-1-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-1-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-1-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-1-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-1-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-1-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-1-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-1-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-1-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-1-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-2-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-2-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-2-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-2-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-2-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-2-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-2-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-2-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-2-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-2-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-2-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-2-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-2-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-2-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-2-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-2-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-2-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-2-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-2-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-2-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-3-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-3-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-3-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-3-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-3-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-3-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-3-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-3-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-3-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-3-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-3-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-3-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-3-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-3-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-3-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-3-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-3-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-3-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-3-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-3-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-4-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-4-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-4-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-4-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-4-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-4-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-4-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-4-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-4-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-4-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-4-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-4-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-4-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-4-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-4-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-4-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-4-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-4-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-4-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-4-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-5-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-5-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-5-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-5-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-5-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-5-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-5-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-5-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-5-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-5-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-5-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-5-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-5-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-5-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-5-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-5-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-5-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-5-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-5-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-5-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-6-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-6-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-6-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-6-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-6-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-6-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-6-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-6-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-6-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-6-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-6-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-6-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-6-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-6-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-6-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-6-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-6-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-6-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-6-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-6-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-7-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-7-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-7-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-7-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-7-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-7-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-7-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-7-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-7-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-7-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-7-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-7-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-7-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-7-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-7-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-7-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-7-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L2-7-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-0-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-0-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-0-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-0-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-0-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-0-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-0-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-0-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-0-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-0-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-0-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-0-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-0-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-0-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-0-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-0-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-0-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-0-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-1-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-1-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-1-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-1-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-1-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-1-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-1-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-1-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-1-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-1-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-1-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-1-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-1-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-1-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-1-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-1-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-1-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-1-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-1-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-1-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-2-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-2-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-2-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-2-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-2-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-2-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-2-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-2-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-2-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-2-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-2-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-2-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-2-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-2-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-2-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-2-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-2-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-2-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-2-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-2-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-3-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-3-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-3-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-3-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-3-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-3-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-3-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-3-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-3-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-3-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-3-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-3-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-3-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-3-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-3-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-3-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-3-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-3-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-3-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-3-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-4-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-4-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-4-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-4-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-4-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-4-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-4-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-4-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-4-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-4-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-4-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-4-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-4-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-4-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-4-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-4-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-4-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-4-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-4-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-4-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-5-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-5-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-5-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-5-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-5-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-5-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-5-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-5-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-5-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-5-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-5-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-5-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-5-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-5-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-5-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-5-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-5-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-5-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-5-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-5-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-6-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-6-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-6-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-6-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-6-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-6-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-6-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-6-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-6-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-6-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-6-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-6-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-6-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-6-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-6-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-6-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-6-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-6-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-6-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-6-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-7-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-7-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-7-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-7-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-7-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-7-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-7-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-7-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-7-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-7-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-7-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-7-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-7-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-7-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-7-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-7-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-7-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L3-7-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-0-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-0-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-0-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-0-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-0-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-0-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-0-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-0-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-0-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-0-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-0-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-0-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-0-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-0-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-0-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-0-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-0-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-0-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-1-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-1-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-1-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-1-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-1-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-1-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-1-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-1-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-1-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-1-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-1-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-1-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-1-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-1-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-1-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-1-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-1-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-1-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-1-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-1-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-2-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-2-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-2-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-2-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-2-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-2-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-2-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-2-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-2-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-2-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-2-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-2-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-2-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-2-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-2-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-2-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-2-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-2-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-2-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-2-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-3-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-3-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-3-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-3-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-3-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-3-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-3-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-3-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-3-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-3-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-3-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-3-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-3-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-3-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-3-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-3-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-3-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-3-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-3-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-3-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-4-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-4-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-4-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-4-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-4-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-4-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-4-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-4-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-4-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-4-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-4-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-4-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-4-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-4-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-4-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-4-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-4-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-4-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-4-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-4-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-5-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-5-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-5-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-5-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-5-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-5-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-5-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-5-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-5-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-5-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-5-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-5-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-5-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-5-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-5-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-5-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-5-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-5-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-5-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-5-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-6-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-6-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-6-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-6-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-6-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-6-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-6-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-6-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-6-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-6-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-6-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-6-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-6-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-6-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-6-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-6-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-6-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-6-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-6-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-6-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-7-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-7-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-7-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-7-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-7-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-7-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-7-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-7-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-7-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-7-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-7-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-7-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-7-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-7-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-7-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-7-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-7-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T49_b18_Lung_PCW20 2 -revcomp | gzip > L4-7-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T49_b18_Lung_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-0-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-0-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-0-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-0-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-0-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-0-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-0-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-0-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-0-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-0-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-0-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-0-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-0-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-0-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-0-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-0-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-0-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-0-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-1-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-1-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-1-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-1-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-1-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-1-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-1-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-1-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-1-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-1-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-1-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-1-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-1-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-1-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-1-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-1-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-1-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-1-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-1-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-1-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-2-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-2-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-2-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-2-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-2-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-2-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-2-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-2-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-2-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-2-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-2-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-2-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-2-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-2-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-2-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-2-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-2-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-2-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-2-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-2-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-3-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-3-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-3-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-3-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-3-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-3-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-3-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-3-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-3-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-3-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-3-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-3-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-3-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-3-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-3-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-3-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-3-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-3-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-3-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-3-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-4-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-4-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-4-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-4-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-4-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-4-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-4-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-4-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-4-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-4-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-4-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-4-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-4-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-4-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-4-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-4-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-4-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-4-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-4-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-4-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-5-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-5-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-5-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-5-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-5-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-5-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-5-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-5-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-5-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-5-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-5-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-5-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-5-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-5-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-5-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-5-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-5-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-5-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-5-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-5-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-6-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-6-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-6-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-6-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-6-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-6-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-6-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-6-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-6-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-6-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-6-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-6-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-6-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-6-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-6-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-6-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-6-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-6-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-6-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-6-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-7-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-7-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-7-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-7-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-7-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-7-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-7-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-7-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-7-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-7-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-7-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-7-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-7-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-7-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-7-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-7-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-7-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-7-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-0-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-0-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-0-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-0-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-0-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-0-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-0-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-0-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-0-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-0-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-0-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-0-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-0-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-0-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-0-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-0-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-0-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-0-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-1-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-1-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-1-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-1-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-1-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-1-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-1-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-1-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-1-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-1-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-1-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-1-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-1-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-1-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-1-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-1-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-1-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-1-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-1-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-1-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-2-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-2-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-2-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-2-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-2-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-2-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-2-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-2-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-2-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-2-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-2-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-2-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-2-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-2-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-2-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-2-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-2-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-2-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-2-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-2-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-3-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-3-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-3-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-3-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-3-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-3-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-3-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-3-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-3-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-3-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-3-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-3-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-3-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-3-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-3-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-3-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-3-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-3-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-3-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-3-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-4-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-4-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-4-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-4-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-4-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-4-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-4-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-4-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-4-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-4-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-4-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-4-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-4-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-4-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-4-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-4-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-4-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-4-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-4-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-4-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-5-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-5-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-5-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-5-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-5-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-5-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-5-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-5-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-5-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-5-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-5-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-5-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-5-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-5-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-5-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-5-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-5-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-5-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-5-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-5-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-6-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-6-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-6-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-6-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-6-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-6-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-6-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-6-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-6-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-6-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-6-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-6-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-6-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-6-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-6-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-6-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-6-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-6-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-6-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-6-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-7-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-7-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-7-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-7-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-7-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-7-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-7-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-7-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-7-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-7-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-7-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-7-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-7-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-7-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-7-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-7-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-7-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-7-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-0-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-0-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-0-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-0-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-0-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-0-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-0-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-0-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-0-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-0-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-0-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-0-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-0-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-0-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-0-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-0-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-0-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-0-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-1-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-1-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-1-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-1-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-1-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-1-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-1-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-1-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-1-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-1-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-1-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-1-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-1-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-1-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-1-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-1-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-1-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-1-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-1-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-1-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-2-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-2-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-2-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-2-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-2-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-2-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-2-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-2-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-2-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-2-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-2-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-2-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-2-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-2-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-2-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-2-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-2-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-2-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-2-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-2-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-3-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-3-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-3-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-3-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-3-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-3-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-3-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-3-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-3-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-3-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-3-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-3-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-3-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-3-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-3-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-3-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-3-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-3-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-3-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-3-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-4-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-4-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-4-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-4-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-4-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-4-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-4-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-4-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-4-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-4-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-4-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-4-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-4-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-4-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-4-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-4-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-4-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-4-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-4-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-4-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-5-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-5-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-5-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-5-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-5-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-5-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-5-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-5-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-5-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-5-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-5-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-5-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-5-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-5-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-5-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-5-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-5-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-5-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-5-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-5-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-6-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-6-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-6-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-6-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-6-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-6-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-6-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-6-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-6-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-6-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-6-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-6-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-6-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-6-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-6-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-6-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-6-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-6-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-6-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-6-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-7-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-7-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-7-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-7-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-7-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-7-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-7-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-7-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-7-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-7-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-7-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-7-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-7-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-7-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-7-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-7-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-7-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-7-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-0-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-0-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-0-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-0-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-0-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-0-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-0-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-0-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-0-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-0-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-0-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-0-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-0-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-0-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-0-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-0-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-0-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-0-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-1-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-1-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-1-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-1-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-1-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-1-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-1-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-1-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-1-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-1-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-1-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-1-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-1-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-1-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-1-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-1-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-1-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-1-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-1-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-1-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-2-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-2-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-2-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-2-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-2-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-2-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-2-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-2-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-2-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-2-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-2-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-2-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-2-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-2-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-2-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-2-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-2-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-2-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-2-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-2-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-3-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-3-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-3-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-3-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-3-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-3-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-3-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-3-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-3-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-3-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-3-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-3-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-3-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-3-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-3-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-3-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-3-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-3-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-3-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-3-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-4-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-4-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-4-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-4-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-4-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-4-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-4-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-4-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-4-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-4-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-4-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-4-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-4-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-4-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-4-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-4-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-4-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-4-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-4-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-4-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-5-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-5-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-5-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-5-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-5-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-5-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-5-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-5-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-5-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-5-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-5-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-5-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-5-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-5-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-5-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-5-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-5-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-5-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-5-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-5-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-6-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-6-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-6-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-6-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-6-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-6-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-6-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-6-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-6-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-6-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-6-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-6-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-6-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-6-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-6-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-6-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-6-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-6-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-6-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-6-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-7-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-7-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-7-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-7-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-7-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-7-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-7-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-7-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-7-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-7-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-7-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-7-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-7-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-7-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-7-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-7-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-7-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-7-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-0-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-0-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-0-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-0-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-0-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-0-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-0-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-0-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-0-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-0-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-0-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-0-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-0-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-0-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-0-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-0-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-0-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-0-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-1-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-1-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-1-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-1-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-1-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-1-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-1-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-1-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-1-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-1-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-1-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-1-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-1-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-1-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-1-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-1-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-1-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-1-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-1-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-1-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-2-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-2-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-2-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-2-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-2-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-2-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-2-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-2-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-2-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-2-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-2-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-2-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-2-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-2-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-2-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-2-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-2-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-2-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-2-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-2-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-3-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-3-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-3-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-3-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-3-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-3-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-3-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-3-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-3-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-3-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-3-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-3-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-3-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-3-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-3-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-3-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-3-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-3-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-3-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-3-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-4-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-4-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-4-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-4-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-4-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-4-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-4-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-4-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-4-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-4-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-4-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-4-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-4-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-4-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-4-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-4-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-4-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-4-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-4-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-4-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-5-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-5-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-5-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-5-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-5-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-5-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-5-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-5-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-5-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-5-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-5-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-5-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-5-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-5-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-5-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-5-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-5-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-5-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-5-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-5-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-6-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-6-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-6-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-6-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-6-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-6-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-6-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-6-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-6-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-6-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-6-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-6-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-6-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-6-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-6-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-6-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-6-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-6-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-6-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-6-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-7-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-7-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-7-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-7-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-7-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-7-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-7-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-7-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-7-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-7-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-7-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-7-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-7-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-7-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-7-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-7-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-7-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L1-7-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-0-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-0-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-0-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-0-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-0-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-0-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-0-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-0-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-0-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-0-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-0-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-0-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-0-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-0-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-0-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-0-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-0-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-0-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-1-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-1-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-1-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-1-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-1-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-1-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-1-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-1-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-1-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-1-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-1-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-1-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-1-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-1-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-1-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-1-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-1-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-1-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-1-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-1-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-2-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-2-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-2-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-2-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-2-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-2-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-2-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-2-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-2-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-2-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-2-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-2-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-2-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-2-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-2-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-2-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-2-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-2-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-2-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-2-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-3-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-3-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-3-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-3-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-3-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-3-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-3-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-3-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-3-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-3-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-3-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-3-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-3-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-3-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-3-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-3-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-3-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-3-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-3-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-3-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-4-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-4-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-4-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-4-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-4-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-4-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-4-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-4-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-4-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-4-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-4-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-4-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-4-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-4-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-4-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-4-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-4-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-4-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-4-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-4-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-5-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-5-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-5-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-5-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-5-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-5-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-5-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-5-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-5-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-5-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-5-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-5-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-5-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-5-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-5-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-5-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-5-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-5-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-5-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-5-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-6-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-6-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-6-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-6-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-6-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-6-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-6-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-6-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-6-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-6-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-6-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-6-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-6-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-6-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-6-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-6-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-6-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-6-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-6-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-6-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-7-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-7-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-7-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-7-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-7-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-7-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-7-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-7-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-7-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-7-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-7-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-7-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-7-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-7-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-7-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-7-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-7-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L2-7-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-0-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-0-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-0-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-0-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-0-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-0-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-0-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-0-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-0-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-0-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-0-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-0-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-0-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-0-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-0-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-0-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-0-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-0-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-1-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-1-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-1-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-1-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-1-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-1-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-1-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-1-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-1-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-1-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-1-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-1-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-1-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-1-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-1-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-1-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-1-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-1-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-1-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-1-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-2-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-2-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-2-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-2-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-2-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-2-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-2-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-2-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-2-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-2-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-2-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-2-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-2-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-2-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-2-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-2-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-2-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-2-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-2-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-2-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-3-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-3-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-3-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-3-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-3-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-3-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-3-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-3-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-3-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-3-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-3-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-3-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-3-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-3-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-3-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-3-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-3-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-3-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-3-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-3-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-4-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-4-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-4-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-4-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-4-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-4-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-4-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-4-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-4-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-4-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-4-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-4-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-4-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-4-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-4-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-4-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-4-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-4-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-4-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-4-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-5-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-5-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-5-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-5-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-5-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-5-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-5-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-5-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-5-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-5-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-5-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-5-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-5-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-5-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-5-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-5-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-5-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-5-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-5-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-5-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-6-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-6-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-6-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-6-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-6-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-6-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-6-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-6-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-6-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-6-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-6-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-6-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-6-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-6-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-6-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-6-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-6-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-6-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-6-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-6-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-7-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-7-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-7-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-7-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-7-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-7-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-7-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-7-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-7-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-7-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-7-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-7-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-7-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-7-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-7-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-7-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-7-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L3-7-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-0-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-0-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-0-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-0-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-0-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-0-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-0-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-0-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-0-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-0-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-0-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-0-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-0-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-0-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-0-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-0-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-0-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-0-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-1-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-1-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-1-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-1-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-1-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-1-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-1-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-1-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-1-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-1-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-1-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-1-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-1-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-1-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-1-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-1-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-1-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-1-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-1-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-1-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-2-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-2-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-2-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-2-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-2-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-2-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-2-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-2-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-2-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-2-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-2-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-2-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-2-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-2-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-2-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-2-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-2-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-2-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-2-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-2-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-3-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-3-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-3-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-3-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-3-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-3-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-3-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-3-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-3-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-3-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-3-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-3-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-3-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-3-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-3-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-3-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-3-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-3-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-3-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-3-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-4-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-4-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-4-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-4-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-4-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-4-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-4-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-4-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-4-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-4-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-4-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-4-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-4-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-4-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-4-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-4-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-4-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-4-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-4-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-4-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-5-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-5-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-5-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-5-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-5-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-5-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-5-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-5-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-5-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-5-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-5-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-5-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-5-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-5-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-5-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-5-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-5-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-5-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-5-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-5-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-6-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-6-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-6-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-6-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-6-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-6-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-6-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-6-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-6-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-6-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-6-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-6-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-6-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-6-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-6-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-6-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-6-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-6-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-6-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-6-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-7-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-7-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-7-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-7-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-7-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-7-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-7-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-7-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-7-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-7-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-7-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-7-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-7-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-7-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-7-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-7-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-7-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T77_b18_Lung_PCW18 2 -revcomp | gzip > L4-7-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T77_b18_Lung_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-0-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-0-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-0-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-0-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-0-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-0-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-0-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-0-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-0-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-0-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-0-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-0-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-0-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-0-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-0-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-0-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-0-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-0-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-1-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-1-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-1-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-1-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-1-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-1-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-1-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-1-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-1-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-1-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-1-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-1-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-1-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-1-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-1-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-1-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-1-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-1-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-1-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-1-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-2-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-2-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-2-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-2-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-2-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-2-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-2-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-2-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-2-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-2-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-2-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-2-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-2-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-2-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-2-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-2-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-2-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-2-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-2-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-2-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-3-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-3-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-3-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-3-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-3-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-3-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-3-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-3-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-3-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-3-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-3-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-3-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-3-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-3-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-3-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-3-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-3-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-3-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-3-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-3-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-4-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-4-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-4-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-4-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-4-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-4-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-4-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-4-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-4-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-4-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-4-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-4-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-4-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-4-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-4-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-4-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-4-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-4-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-4-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-4-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-5-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-5-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-5-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-5-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-5-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-5-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-5-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-5-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-5-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-5-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-5-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-5-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-5-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-5-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-5-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-5-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-5-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-5-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-5-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-5-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-6-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-6-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-6-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-6-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-6-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-6-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-6-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-6-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-6-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-6-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-6-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-6-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-6-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-6-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-6-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-6-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-6-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-6-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-6-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-6-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-7-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-7-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-7-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-7-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-7-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-7-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-7-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-7-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-7-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-7-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-7-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-7-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-7-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-7-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-7-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-7-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-7-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-7-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-0-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-0-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-0-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-0-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-0-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-0-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-0-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-0-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-0-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-0-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-0-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-0-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-0-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-0-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-0-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-0-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-0-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-0-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-1-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-1-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-1-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-1-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-1-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-1-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-1-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-1-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-1-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-1-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-1-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-1-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-1-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-1-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-1-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-1-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-1-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-1-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-1-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-1-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-2-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-2-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-2-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-2-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-2-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-2-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-2-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-2-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-2-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-2-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-2-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-2-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-2-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-2-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-2-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-2-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-2-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-2-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-2-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-2-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-3-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-3-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-3-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-3-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-3-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-3-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-3-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-3-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-3-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-3-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-3-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-3-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-3-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-3-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-3-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-3-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-3-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-3-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-3-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-3-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-4-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-4-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-4-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-4-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-4-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-4-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-4-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-4-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-4-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-4-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-4-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-4-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-4-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-4-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-4-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-4-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-4-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-4-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-4-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-4-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-5-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-5-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-5-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-5-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-5-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-5-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-5-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-5-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-5-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-5-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-5-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-5-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-5-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-5-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-5-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-5-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-5-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-5-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-5-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-5-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-6-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-6-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-6-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-6-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-6-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-6-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-6-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-6-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-6-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-6-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-6-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-6-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-6-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-6-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-6-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-6-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-6-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-6-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-6-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-6-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-7-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-7-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-7-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-7-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-7-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-7-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-7-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-7-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-7-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-7-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-7-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-7-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-7-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-7-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-7-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-7-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-7-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-7-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-0-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-0-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-0-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-0-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-0-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-0-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-0-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-0-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-0-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-0-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-0-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-0-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-0-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-0-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-0-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-0-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-0-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-0-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-1-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-1-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-1-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-1-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-1-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-1-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-1-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-1-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-1-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-1-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-1-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-1-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-1-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-1-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-1-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-1-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-1-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-1-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-1-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-1-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-2-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-2-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-2-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-2-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-2-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-2-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-2-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-2-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-2-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-2-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-2-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-2-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-2-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-2-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-2-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-2-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-2-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-2-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-2-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-2-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-3-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-3-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-3-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-3-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-3-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-3-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-3-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-3-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-3-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-3-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-3-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-3-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-3-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-3-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-3-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-3-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-3-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-3-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-3-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-3-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-4-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-4-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-4-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-4-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-4-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-4-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-4-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-4-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-4-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-4-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-4-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-4-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-4-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-4-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-4-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-4-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-4-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-4-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-4-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-4-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-5-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-5-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-5-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-5-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-5-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-5-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-5-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-5-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-5-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-5-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-5-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-5-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-5-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-5-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-5-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-5-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-5-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-5-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-5-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-5-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-6-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-6-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-6-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-6-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-6-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-6-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-6-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-6-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-6-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-6-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-6-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-6-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-6-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-6-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-6-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-6-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-6-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-6-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-6-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-6-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-7-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-7-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-7-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-7-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-7-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-7-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-7-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-7-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-7-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-7-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-7-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-7-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-7-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-7-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-7-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-7-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-7-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-7-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-0-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-0-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-0-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-0-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-0-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-0-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-0-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-0-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-0-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-0-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-0-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-0-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-0-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-0-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-0-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-0-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-0-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-0-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-1-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-1-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-1-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-1-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-1-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-1-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-1-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-1-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-1-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-1-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-1-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-1-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-1-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-1-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-1-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-1-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-1-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-1-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-1-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-1-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-2-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-2-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-2-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-2-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-2-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-2-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-2-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-2-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-2-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-2-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-2-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-2-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-2-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-2-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-2-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-2-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-2-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-2-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-2-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-2-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-3-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-3-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-3-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-3-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-3-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-3-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-3-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-3-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-3-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-3-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-3-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-3-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-3-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-3-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-3-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-3-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-3-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-3-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-3-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-3-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-4-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-4-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-4-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-4-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-4-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-4-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-4-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-4-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-4-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-4-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-4-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-4-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-4-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-4-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-4-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-4-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-4-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-4-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-4-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-4-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-5-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-5-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-5-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-5-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-5-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-5-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-5-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-5-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-5-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-5-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-5-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-5-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-5-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-5-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-5-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-5-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-5-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-5-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-5-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-5-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-6-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-6-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-6-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-6-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-6-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-6-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-6-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-6-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-6-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-6-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-6-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-6-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-6-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-6-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-6-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-6-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-6-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-6-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-6-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-6-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-7-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-7-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-7-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-7-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-7-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-7-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-7-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-7-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-7-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-7-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-7-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-7-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-7-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-7-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-7-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-7-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-7-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-7-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-0-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-0-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-0-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-0-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-0-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-0-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-0-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-0-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-0-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-0-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-0-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-0-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-0-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-0-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-0-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-0-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-0-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-0-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-1-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-1-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-1-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-1-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-1-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-1-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-1-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-1-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-1-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-1-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-1-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-1-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-1-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-1-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-1-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-1-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-1-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-1-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-1-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-1-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-2-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-2-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-2-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-2-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-2-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-2-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-2-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-2-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-2-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-2-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-2-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-2-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-2-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-2-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-2-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-2-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-2-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-2-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-2-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-2-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-3-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-3-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-3-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-3-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-3-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-3-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-3-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-3-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-3-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-3-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-3-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-3-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-3-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-3-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-3-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-3-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-3-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-3-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-3-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-3-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-4-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-4-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-4-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-4-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-4-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-4-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-4-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-4-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-4-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-4-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-4-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-4-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-4-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-4-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-4-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-4-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-4-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-4-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-4-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-4-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-5-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-5-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-5-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-5-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-5-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-5-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-5-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-5-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-5-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-5-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-5-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-5-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-5-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-5-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-5-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-5-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-5-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-5-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-5-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-5-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-6-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-6-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-6-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-6-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-6-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-6-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-6-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-6-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-6-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-6-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-6-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-6-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-6-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-6-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-6-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-6-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-6-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-6-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-6-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-6-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-7-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-7-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-7-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-7-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-7-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-7-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-7-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-7-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-7-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-7-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-7-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-7-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-7-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-7-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-7-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-7-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-7-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L1-7-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-0-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-0-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-0-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-0-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-0-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-0-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-0-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-0-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-0-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-0-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-0-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-0-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-0-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-0-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-0-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-0-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-0-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-0-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-1-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-1-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-1-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-1-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-1-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-1-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-1-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-1-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-1-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-1-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-1-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-1-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-1-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-1-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-1-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-1-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-1-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-1-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-1-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-1-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-2-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-2-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-2-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-2-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-2-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-2-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-2-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-2-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-2-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-2-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-2-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-2-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-2-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-2-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-2-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-2-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-2-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-2-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-2-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-2-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-3-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-3-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-3-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-3-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-3-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-3-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-3-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-3-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-3-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-3-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-3-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-3-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-3-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-3-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-3-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-3-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-3-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-3-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-3-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-3-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-4-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-4-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-4-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-4-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-4-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-4-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-4-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-4-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-4-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-4-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-4-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-4-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-4-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-4-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-4-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-4-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-4-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-4-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-4-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-4-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-5-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-5-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-5-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-5-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-5-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-5-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-5-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-5-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-5-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-5-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-5-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-5-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-5-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-5-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-5-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-5-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-5-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-5-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-5-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-5-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-6-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-6-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-6-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-6-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-6-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-6-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-6-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-6-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-6-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-6-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-6-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-6-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-6-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-6-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-6-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-6-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-6-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-6-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-6-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-6-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-7-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-7-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-7-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-7-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-7-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-7-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-7-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-7-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-7-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-7-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-7-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-7-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-7-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-7-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-7-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-7-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-7-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L2-7-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-0-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-0-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-0-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-0-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-0-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-0-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-0-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-0-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-0-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-0-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-0-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-0-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-0-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-0-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-0-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-0-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-0-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-0-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-1-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-1-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-1-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-1-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-1-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-1-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-1-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-1-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-1-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-1-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-1-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-1-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-1-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-1-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-1-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-1-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-1-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-1-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-1-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-1-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-2-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-2-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-2-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-2-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-2-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-2-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-2-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-2-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-2-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-2-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-2-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-2-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-2-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-2-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-2-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-2-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-2-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-2-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-2-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-2-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-3-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-3-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-3-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-3-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-3-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-3-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-3-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-3-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-3-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-3-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-3-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-3-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-3-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-3-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-3-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-3-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-3-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-3-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-3-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-3-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-4-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-4-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-4-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-4-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-4-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-4-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-4-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-4-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-4-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-4-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-4-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-4-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-4-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-4-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-4-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-4-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-4-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-4-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-4-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-4-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-5-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-5-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-5-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-5-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-5-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-5-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-5-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-5-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-5-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-5-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-5-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-5-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-5-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-5-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-5-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-5-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-5-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-5-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-5-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-5-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-6-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-6-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-6-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-6-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-6-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-6-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-6-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-6-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-6-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-6-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-6-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-6-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-6-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-6-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-6-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-6-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-6-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-6-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-6-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-6-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-7-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-7-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-7-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-7-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-7-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-7-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-7-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-7-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-7-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-7-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-7-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-7-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-7-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-7-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-7-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-7-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-7-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L3-7-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-0-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-0-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-0-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-0-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-0-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-0-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-0-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-0-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-0-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-0-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-0-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-0-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-0-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-0-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-0-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-0-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-0-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-0-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-1-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-1-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-1-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-1-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-1-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-1-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-1-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-1-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-1-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-1-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-1-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-1-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-1-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-1-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-1-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-1-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-1-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-1-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-1-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-1-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-2-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-2-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-2-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-2-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-2-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-2-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-2-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-2-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-2-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-2-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-2-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-2-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-2-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-2-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-2-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-2-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-2-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-2-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-2-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-2-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-3-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-3-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-3-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-3-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-3-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-3-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-3-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-3-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-3-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-3-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-3-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-3-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-3-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-3-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-3-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-3-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-3-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-3-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-3-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-3-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-4-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-4-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-4-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-4-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-4-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-4-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-4-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-4-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-4-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-4-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-4-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-4-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-4-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-4-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-4-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-4-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-4-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-4-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-4-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-4-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-5-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-5-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-5-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-5-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-5-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-5-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-5-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-5-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-5-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-5-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-5-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-5-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-5-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-5-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-5-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-5-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-5-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-5-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-5-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-5-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-6-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-6-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-6-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-6-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-6-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-6-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-6-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-6-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-6-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-6-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-6-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-6-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-6-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-6-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-6-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-6-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-6-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-6-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-6-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-6-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-7-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-7-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-7-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-7-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-7-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-7-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-7-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-7-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-7-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-7-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-7-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-7-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-7-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-7-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-7-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-7-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-7-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T175_b18_Lung_PCW19 2 -revcomp | gzip > L4-7-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T175_b18_Lung_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-0-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-0-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-0-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-0-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-0-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-0-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-0-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-0-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-0-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-0-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-0-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-0-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-0-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-0-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-0-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-0-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-0-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-0-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-1-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-1-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-1-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-1-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-1-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-1-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-1-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-1-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-1-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-1-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-1-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-1-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-1-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-1-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-1-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-1-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-1-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-1-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-1-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-1-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-2-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-2-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-2-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-2-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-2-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-2-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-2-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-2-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-2-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-2-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-2-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-2-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-2-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-2-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-2-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-2-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-2-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-2-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-2-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-2-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-3-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-3-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-3-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-3-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-3-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-3-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-3-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-3-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-3-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-3-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-3-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-3-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-3-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-3-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-3-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-3-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-3-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-3-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-3-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-3-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-4-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-4-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-4-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-4-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-4-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-4-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-4-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-4-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-4-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-4-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-4-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-4-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-4-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-4-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-4-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-4-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-4-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-4-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-4-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-4-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-5-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-5-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-5-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-5-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-5-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-5-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-5-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-5-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-5-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-5-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-5-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-5-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-5-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-5-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-5-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-5-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-5-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-5-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-5-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-5-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-6-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-6-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-6-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-6-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-6-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-6-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-6-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-6-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-6-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-6-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-6-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-6-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-6-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-6-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-6-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-6-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-6-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-6-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-6-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-6-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-7-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-7-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-7-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-7-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-7-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-7-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-7-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-7-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-7-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-7-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-7-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-7-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-7-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-7-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-7-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-7-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-7-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-7-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-0-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-0-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-0-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-0-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-0-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-0-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-0-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-0-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-0-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-0-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-0-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-0-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-0-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-0-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-0-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-0-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-0-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-0-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-1-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-1-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-1-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-1-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-1-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-1-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-1-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-1-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-1-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-1-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-1-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-1-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-1-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-1-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-1-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-1-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-1-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-1-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-1-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-1-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-2-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-2-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-2-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-2-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-2-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-2-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-2-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-2-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-2-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-2-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-2-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-2-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-2-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-2-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-2-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-2-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-2-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-2-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-2-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-2-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-3-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-3-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-3-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-3-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-3-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-3-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-3-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-3-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-3-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-3-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-3-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-3-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-3-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-3-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-3-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-3-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-3-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-3-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-3-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-3-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-4-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-4-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-4-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-4-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-4-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-4-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-4-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-4-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-4-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-4-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-4-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-4-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-4-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-4-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-4-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-4-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-4-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-4-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-4-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-4-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-5-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-5-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-5-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-5-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-5-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-5-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-5-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-5-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-5-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-5-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-5-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-5-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-5-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-5-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-5-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-5-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-5-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-5-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-5-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-5-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-6-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-6-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-6-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-6-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-6-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-6-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-6-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-6-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-6-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-6-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-6-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-6-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-6-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-6-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-6-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-6-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-6-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-6-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-6-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-6-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-7-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-7-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-7-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-7-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-7-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-7-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-7-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-7-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-7-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-7-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-7-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-7-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-7-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-7-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-7-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-7-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-7-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-7-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-0-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-0-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-0-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-0-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-0-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-0-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-0-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-0-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-0-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-0-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-0-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-0-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-0-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-0-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-0-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-0-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-0-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-0-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-1-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-1-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-1-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-1-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-1-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-1-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-1-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-1-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-1-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-1-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-1-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-1-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-1-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-1-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-1-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-1-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-1-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-1-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-1-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-1-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-2-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-2-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-2-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-2-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-2-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-2-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-2-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-2-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-2-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-2-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-2-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-2-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-2-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-2-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-2-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-2-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-2-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-2-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-2-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-2-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-3-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-3-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-3-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-3-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-3-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-3-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-3-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-3-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-3-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-3-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-3-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-3-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-3-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-3-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-3-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-3-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-3-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-3-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-3-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-3-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-4-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-4-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-4-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-4-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-4-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-4-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-4-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-4-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-4-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-4-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-4-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-4-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-4-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-4-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-4-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-4-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-4-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-4-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-4-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-4-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-5-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-5-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-5-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-5-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-5-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-5-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-5-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-5-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-5-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-5-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-5-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-5-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-5-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-5-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-5-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-5-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-5-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-5-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-5-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-5-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-6-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-6-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-6-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-6-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-6-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-6-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-6-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-6-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-6-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-6-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-6-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-6-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-6-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-6-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-6-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-6-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-6-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-6-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-6-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-6-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-7-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-7-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-7-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-7-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-7-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-7-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-7-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-7-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-7-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-7-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-7-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-7-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-7-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-7-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-7-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-7-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-7-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-7-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-0-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-0-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-0-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-0-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-0-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-0-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-0-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-0-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-0-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-0-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-0-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-0-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-0-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-0-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-0-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-0-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-0-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-0-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-1-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-1-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-1-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-1-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-1-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-1-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-1-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-1-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-1-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-1-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-1-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-1-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-1-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-1-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-1-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-1-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-1-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-1-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-1-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-1-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-2-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-2-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-2-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-2-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-2-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-2-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-2-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-2-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-2-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-2-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-2-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-2-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-2-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-2-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-2-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-2-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-2-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-2-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-2-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-2-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-3-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-3-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-3-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-3-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-3-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-3-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-3-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-3-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-3-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-3-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-3-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-3-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-3-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-3-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-3-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-3-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-3-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-3-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-3-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-3-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-4-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-4-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-4-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-4-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-4-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-4-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-4-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-4-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-4-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-4-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-4-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-4-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-4-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-4-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-4-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-4-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-4-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-4-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-4-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-4-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-5-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-5-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-5-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-5-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-5-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-5-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-5-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-5-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-5-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-5-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-5-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-5-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-5-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-5-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-5-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-5-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-5-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-5-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-5-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-5-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-6-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-6-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-6-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-6-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-6-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-6-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-6-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-6-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-6-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-6-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-6-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-6-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-6-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-6-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-6-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-6-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-6-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-6-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-6-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-6-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-7-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-7-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-7-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-7-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-7-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-7-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-7-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-7-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-7-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-7-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-7-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-7-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-7-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-7-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-7-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-7-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-7-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-7-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-0-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-0-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-0-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-0-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-0-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-0-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-0-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-0-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-0-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-0-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-0-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-0-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-0-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-0-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-0-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-0-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-0-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-0-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-1-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-1-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-1-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-1-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-1-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-1-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-1-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-1-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-1-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-1-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-1-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-1-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-1-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-1-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-1-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-1-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-1-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-1-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-1-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-1-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-2-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-2-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-2-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-2-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-2-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-2-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-2-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-2-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-2-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-2-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-2-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-2-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-2-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-2-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-2-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-2-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-2-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-2-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-2-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-2-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-3-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-3-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-3-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-3-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-3-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-3-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-3-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-3-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-3-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-3-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-3-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-3-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-3-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-3-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-3-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-3-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-3-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-3-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-3-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-3-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-4-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-4-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-4-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-4-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-4-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-4-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-4-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-4-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-4-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-4-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-4-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-4-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-4-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-4-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-4-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-4-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-4-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-4-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-4-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-4-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-5-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-5-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-5-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-5-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-5-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-5-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-5-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-5-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-5-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-5-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-5-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-5-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-5-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-5-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-5-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-5-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-5-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-5-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-5-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-5-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-6-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-6-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-6-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-6-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-6-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-6-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-6-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-6-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-6-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-6-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-6-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-6-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-6-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-6-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-6-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-6-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-6-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-6-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-6-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-6-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-7-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-7-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-7-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-7-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-7-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-7-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-7-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-7-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-7-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-7-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-7-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-7-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-7-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-7-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-7-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-7-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-7-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L1-7-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-0-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-0-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-0-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-0-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-0-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-0-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-0-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-0-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-0-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-0-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-0-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-0-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-0-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-0-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-0-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-0-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-0-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-0-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-1-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-1-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-1-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-1-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-1-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-1-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-1-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-1-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-1-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-1-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-1-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-1-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-1-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-1-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-1-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-1-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-1-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-1-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-1-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-1-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-2-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-2-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-2-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-2-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-2-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-2-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-2-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-2-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-2-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-2-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-2-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-2-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-2-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-2-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-2-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-2-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-2-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-2-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-2-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-2-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-3-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-3-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-3-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-3-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-3-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-3-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-3-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-3-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-3-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-3-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-3-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-3-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-3-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-3-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-3-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-3-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-3-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-3-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-3-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-3-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-4-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-4-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-4-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-4-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-4-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-4-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-4-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-4-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-4-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-4-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-4-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-4-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-4-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-4-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-4-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-4-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-4-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-4-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-4-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-4-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-5-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-5-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-5-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-5-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-5-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-5-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-5-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-5-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-5-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-5-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-5-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-5-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-5-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-5-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-5-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-5-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-5-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-5-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-5-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-5-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-6-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-6-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-6-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-6-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-6-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-6-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-6-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-6-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-6-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-6-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-6-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-6-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-6-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-6-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-6-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-6-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-6-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-6-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-6-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-6-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-7-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-7-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-7-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-7-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-7-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-7-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-7-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-7-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-7-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-7-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-7-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-7-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-7-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-7-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-7-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-7-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-7-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L2-7-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-0-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-0-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-0-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-0-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-0-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-0-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-0-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-0-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-0-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-0-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-0-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-0-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-0-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-0-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-0-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-0-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-0-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-0-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-1-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-1-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-1-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-1-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-1-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-1-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-1-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-1-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-1-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-1-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-1-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-1-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-1-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-1-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-1-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-1-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-1-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-1-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-1-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-1-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-2-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-2-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-2-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-2-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-2-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-2-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-2-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-2-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-2-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-2-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-2-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-2-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-2-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-2-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-2-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-2-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-2-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-2-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-2-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-2-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-3-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-3-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-3-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-3-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-3-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-3-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-3-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-3-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-3-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-3-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-3-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-3-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-3-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-3-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-3-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-3-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-3-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-3-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-3-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-3-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-4-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-4-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-4-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-4-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-4-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-4-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-4-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-4-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-4-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-4-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-4-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-4-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-4-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-4-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-4-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-4-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-4-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-4-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-4-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-4-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-5-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-5-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-5-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-5-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-5-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-5-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-5-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-5-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-5-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-5-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-5-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-5-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-5-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-5-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-5-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-5-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-5-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-5-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-5-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-5-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-6-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-6-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-6-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-6-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-6-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-6-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-6-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-6-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-6-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-6-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-6-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-6-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-6-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-6-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-6-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-6-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-6-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-6-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-6-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-6-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-7-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-7-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-7-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-7-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-7-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-7-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-7-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-7-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-7-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-7-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-7-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-7-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-7-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-7-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-7-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-7-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-7-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L3-7-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-0-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-0-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-0-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-0-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-0-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-0-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-0-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-0-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-0-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-0-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-0-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-0-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-0-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-0-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-0-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-0-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-0-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-0-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-1-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-1-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-1-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-1-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-1-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-1-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-1-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-1-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-1-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-1-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-1-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-1-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-1-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-1-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-1-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-1-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-1-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-1-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-1-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-1-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-2-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-2-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-2-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-2-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-2-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-2-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-2-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-2-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-2-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-2-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-2-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-2-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-2-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-2-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-2-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-2-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-2-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-2-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-2-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-2-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-3-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-3-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-3-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-3-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-3-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-3-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-3-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-3-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-3-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-3-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-3-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-3-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-3-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-3-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-3-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-3-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-3-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-3-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-3-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-3-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-4-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-4-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-4-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-4-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-4-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-4-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-4-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-4-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-4-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-4-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-4-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-4-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-4-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-4-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-4-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-4-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-4-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-4-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-4-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-4-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-5-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-5-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-5-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-5-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-5-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-5-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-5-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-5-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-5-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-5-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-5-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-5-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-5-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-5-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-5-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-5-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-5-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-5-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-5-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-5-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-6-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-6-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-6-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-6-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-6-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-6-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-6-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-6-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-6-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-6-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-6-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-6-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-6-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-6-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-6-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-6-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-6-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-6-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-6-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-6-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-7-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-7-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-7-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-7-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-7-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-7-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-7-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-7-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-7-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-7-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-7-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-7-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-7-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-7-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-7-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-7-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-7-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T24_b18_Lung_PCW17 2 -revcomp | gzip > L4-7-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T24_b18_Lung_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-0-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-0-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-0-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-0-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-0-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-0-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-0-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-0-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-0-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-0-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-0-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-0-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-0-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-0-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-0-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-0-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-0-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-0-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-1-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-1-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-1-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-1-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-1-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-1-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-1-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-1-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-1-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-1-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-1-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-1-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-1-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-1-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-1-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-1-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-1-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-1-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-1-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-1-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-2-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-2-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-2-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-2-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-2-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-2-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-2-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-2-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-2-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-2-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-2-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-2-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-2-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-2-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-2-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-2-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-2-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-2-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-2-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-2-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-3-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-3-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-3-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-3-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-3-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-3-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-3-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-3-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-3-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-3-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-3-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-3-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-3-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-3-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-3-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-3-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-3-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-3-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-3-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-3-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-4-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-4-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-4-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-4-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-4-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-4-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-4-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-4-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-4-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-4-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-4-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-4-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-4-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-4-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-4-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-4-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-4-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-4-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-4-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-4-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-5-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-5-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-5-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-5-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-5-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-5-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-5-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-5-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-5-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-5-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-5-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-5-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-5-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-5-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-5-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-5-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-5-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-5-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-5-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-5-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-6-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-6-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-6-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-6-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-6-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-6-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-6-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-6-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-6-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-6-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-6-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-6-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-6-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-6-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-6-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-6-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-6-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-6-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-6-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-6-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-7-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-7-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-7-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-7-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-7-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-7-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-7-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-7-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-7-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-7-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-7-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-7-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-7-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-7-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-7-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-7-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-7-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-7-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-0-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-0-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-0-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-0-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-0-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-0-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-0-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-0-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-0-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-0-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-0-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-0-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-0-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-0-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-0-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-0-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-0-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-0-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-1-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-1-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-1-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-1-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-1-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-1-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-1-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-1-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-1-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-1-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-1-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-1-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-1-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-1-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-1-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-1-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-1-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-1-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-1-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-1-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-2-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-2-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-2-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-2-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-2-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-2-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-2-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-2-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-2-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-2-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-2-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-2-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-2-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-2-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-2-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-2-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-2-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-2-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-2-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-2-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-3-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-3-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-3-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-3-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-3-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-3-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-3-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-3-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-3-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-3-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-3-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-3-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-3-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-3-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-3-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-3-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-3-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-3-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-3-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-3-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-4-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-4-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-4-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-4-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-4-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-4-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-4-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-4-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-4-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-4-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-4-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-4-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-4-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-4-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-4-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-4-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-4-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-4-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-4-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-4-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-5-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-5-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-5-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-5-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-5-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-5-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-5-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-5-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-5-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-5-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-5-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-5-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-5-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-5-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-5-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-5-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-5-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-5-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-5-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-5-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-6-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-6-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-6-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-6-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-6-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-6-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-6-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-6-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-6-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-6-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-6-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-6-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-6-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-6-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-6-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-6-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-6-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-6-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-6-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-6-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-7-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-7-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-7-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-7-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-7-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-7-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-7-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-7-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-7-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-7-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-7-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-7-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-7-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-7-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-7-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-7-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-7-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-7-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-0-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-0-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-0-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-0-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-0-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-0-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-0-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-0-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-0-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-0-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-0-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-0-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-0-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-0-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-0-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-0-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-0-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-0-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-1-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-1-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-1-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-1-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-1-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-1-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-1-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-1-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-1-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-1-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-1-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-1-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-1-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-1-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-1-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-1-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-1-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-1-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-1-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-1-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-2-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-2-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-2-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-2-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-2-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-2-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-2-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-2-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-2-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-2-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-2-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-2-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-2-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-2-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-2-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-2-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-2-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-2-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-2-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-2-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-3-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-3-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-3-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-3-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-3-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-3-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-3-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-3-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-3-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-3-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-3-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-3-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-3-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-3-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-3-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-3-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-3-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-3-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-3-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-3-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-4-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-4-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-4-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-4-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-4-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-4-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-4-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-4-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-4-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-4-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-4-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-4-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-4-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-4-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-4-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-4-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-4-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-4-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-4-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-4-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-5-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-5-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-5-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-5-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-5-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-5-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-5-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-5-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-5-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-5-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-5-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-5-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-5-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-5-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-5-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-5-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-5-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-5-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-5-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-5-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-6-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-6-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-6-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-6-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-6-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-6-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-6-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-6-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-6-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-6-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-6-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-6-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-6-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-6-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-6-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-6-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-6-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-6-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-6-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-6-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-7-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-7-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-7-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-7-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-7-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-7-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-7-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-7-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-7-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-7-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-7-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-7-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-7-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-7-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-7-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-7-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-7-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-7-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-0-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-0-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-0-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-0-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-0-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-0-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-0-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-0-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-0-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-0-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-0-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-0-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-0-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-0-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-0-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-0-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-0-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-0-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-1-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-1-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-1-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-1-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-1-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-1-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-1-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-1-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-1-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-1-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-1-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-1-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-1-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-1-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-1-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-1-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-1-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-1-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-1-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-1-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-2-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-2-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-2-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-2-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-2-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-2-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-2-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-2-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-2-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-2-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-2-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-2-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-2-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-2-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-2-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-2-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-2-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-2-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-2-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-2-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-3-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-3-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-3-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-3-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-3-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-3-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-3-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-3-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-3-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-3-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-3-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-3-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-3-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-3-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-3-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-3-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-3-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-3-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-3-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-3-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-4-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-4-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-4-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-4-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-4-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-4-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-4-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-4-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-4-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-4-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-4-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-4-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-4-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-4-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-4-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-4-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-4-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-4-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-4-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-4-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-5-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-5-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-5-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-5-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-5-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-5-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-5-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-5-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-5-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-5-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-5-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-5-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-5-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-5-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-5-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-5-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-5-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-5-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-5-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-5-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-6-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-6-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-6-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-6-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-6-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-6-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-6-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-6-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-6-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-6-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-6-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-6-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-6-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-6-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-6-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-6-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-6-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-6-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-6-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-6-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-7-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-7-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-7-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-7-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-7-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-7-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-7-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-7-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-7-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-7-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-7-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-7-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-7-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-7-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-7-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-7-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-7-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-7-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-0-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-0-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-0-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-0-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-0-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-0-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-0-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-0-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-0-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-0-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-0-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-0-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-0-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-0-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-0-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-0-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-0-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-0-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-1-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-1-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-1-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-1-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-1-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-1-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-1-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-1-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-1-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-1-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-1-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-1-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-1-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-1-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-1-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-1-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-1-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-1-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-1-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-1-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-2-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-2-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-2-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-2-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-2-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-2-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-2-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-2-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-2-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-2-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-2-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-2-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-2-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-2-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-2-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-2-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-2-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-2-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-2-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-2-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-3-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-3-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-3-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-3-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-3-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-3-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-3-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-3-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-3-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-3-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-3-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-3-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-3-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-3-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-3-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-3-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-3-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-3-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-3-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-3-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-4-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-4-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-4-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-4-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-4-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-4-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-4-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-4-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-4-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-4-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-4-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-4-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-4-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-4-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-4-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-4-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-4-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-4-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-4-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-4-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-5-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-5-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-5-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-5-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-5-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-5-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-5-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-5-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-5-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-5-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-5-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-5-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-5-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-5-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-5-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-5-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-5-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-5-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-5-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-5-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-6-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-6-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-6-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-6-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-6-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-6-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-6-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-6-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-6-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-6-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-6-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-6-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-6-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-6-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-6-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-6-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-6-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-6-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-6-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-6-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-7-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-7-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-7-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-7-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-7-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-7-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-7-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-7-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-7-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-7-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-7-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-7-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-7-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-7-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-7-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-7-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-7-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L1-7-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-0-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-0-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-0-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-0-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-0-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-0-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-0-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-0-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-0-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-0-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-0-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-0-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-0-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-0-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-0-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-0-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-0-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-0-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-1-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-1-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-1-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-1-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-1-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-1-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-1-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-1-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-1-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-1-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-1-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-1-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-1-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-1-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-1-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-1-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-1-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-1-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-1-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-1-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-2-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-2-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-2-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-2-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-2-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-2-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-2-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-2-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-2-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-2-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-2-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-2-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-2-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-2-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-2-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-2-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-2-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-2-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-2-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-2-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-3-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-3-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-3-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-3-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-3-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-3-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-3-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-3-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-3-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-3-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-3-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-3-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-3-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-3-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-3-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-3-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-3-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-3-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-3-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-3-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-4-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-4-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-4-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-4-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-4-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-4-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-4-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-4-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-4-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-4-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-4-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-4-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-4-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-4-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-4-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-4-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-4-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-4-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-4-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-4-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-5-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-5-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-5-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-5-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-5-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-5-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-5-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-5-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-5-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-5-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-5-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-5-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-5-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-5-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-5-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-5-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-5-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-5-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-5-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-5-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-6-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-6-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-6-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-6-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-6-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-6-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-6-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-6-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-6-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-6-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-6-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-6-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-6-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-6-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-6-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-6-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-6-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-6-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-6-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-6-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-7-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-7-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-7-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-7-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-7-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-7-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-7-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-7-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-7-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-7-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-7-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-7-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-7-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-7-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-7-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-7-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-7-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L2-7-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-0-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-0-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-0-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-0-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-0-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-0-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-0-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-0-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-0-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-0-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-0-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-0-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-0-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-0-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-0-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-0-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-0-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-0-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-1-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-1-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-1-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-1-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-1-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-1-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-1-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-1-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-1-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-1-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-1-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-1-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-1-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-1-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-1-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-1-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-1-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-1-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-1-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-1-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-2-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-2-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-2-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-2-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-2-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-2-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-2-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-2-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-2-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-2-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-2-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-2-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-2-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-2-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-2-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-2-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-2-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-2-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-2-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-2-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-3-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-3-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-3-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-3-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-3-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-3-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-3-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-3-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-3-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-3-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-3-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-3-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-3-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-3-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-3-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-3-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-3-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-3-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-3-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-3-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-4-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-4-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-4-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-4-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-4-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-4-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-4-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-4-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-4-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-4-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-4-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-4-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-4-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-4-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-4-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-4-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-4-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-4-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-4-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-4-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-5-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-5-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-5-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-5-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-5-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-5-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-5-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-5-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-5-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-5-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-5-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-5-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-5-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-5-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-5-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-5-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-5-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-5-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-5-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-5-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-6-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-6-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-6-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-6-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-6-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-6-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-6-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-6-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-6-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-6-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-6-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-6-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-6-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-6-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-6-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-6-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-6-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-6-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-6-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-6-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-7-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-7-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-7-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-7-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-7-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-7-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-7-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-7-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-7-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-7-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-7-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-7-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-7-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-7-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-7-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-7-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-7-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L3-7-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-0-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-0-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-0-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-0-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-0-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-0-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-0-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-0-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-0-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-0-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-0-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-0-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-0-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-0-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-0-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-0-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-0-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-0-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-1-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-1-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-1-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-1-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-1-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-1-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-1-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-1-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-1-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-1-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-1-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-1-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-1-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-1-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-1-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-1-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-1-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-1-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-1-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-1-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-2-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-2-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-2-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-2-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-2-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-2-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-2-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-2-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-2-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-2-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-2-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-2-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-2-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-2-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-2-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-2-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-2-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-2-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-2-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-2-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-3-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-3-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-3-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-3-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-3-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-3-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-3-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-3-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-3-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-3-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-3-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-3-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-3-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-3-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-3-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-3-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-3-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-3-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-3-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-3-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-4-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-4-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-4-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-4-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-4-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-4-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-4-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-4-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-4-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-4-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-4-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-4-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-4-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-4-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-4-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-4-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-4-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-4-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-4-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-4-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-5-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-5-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-5-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-5-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-5-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-5-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-5-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-5-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-5-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-5-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-5-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-5-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-5-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-5-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-5-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-5-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-5-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-5-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-5-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-5-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-6-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-6-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-6-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-6-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-6-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-6-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-6-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-6-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-6-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-6-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-6-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-6-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-6-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-6-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-6-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-6-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-6-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-6-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-6-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-6-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-7-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-7-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-7-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-7-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-7-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-7-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-7-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-7-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-7-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-7-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-7-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-7-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-7-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-7-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-7-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-7-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-7-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T198_b18_Lung_PCW23 2 -revcomp | gzip > L4-7-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T198_b18_Lung_PCW23.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T305_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T305_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL289_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL289_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL290_b18_RNA_lungredo2.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL290_b18_RNA_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL281_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.end2.fastq.gz 2 barcode_T333_b18_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL282_b18_ATAC_lungredo2.barcodes_annotated.barcode_T333_b18_Lung_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-1/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-2/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-3/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-4/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-5/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-6/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-7/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-8/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-9/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-0/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-1/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-2/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-3/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-4/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-5/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-6/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-7/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-8/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-9/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-0/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-1/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-2/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-3/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-4/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-5/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-6/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-7/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-8/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-9/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-0/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-1/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-2/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-3/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-4/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-5/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-6/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-7/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-8/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-9/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-0/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-1/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-2/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-3/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-4/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-5/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-6/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-7/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-8/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-9/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-0/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-1/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-2/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-3/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-4/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-5/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-6/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-7/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-8/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-9/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-0/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-1/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-2/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-3/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-4/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-5/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-6/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-7/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-8/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-9/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-0/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-1/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-2/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-3/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-4/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-5/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-6/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-7/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-8/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-1/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-2/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-3/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-4/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-5/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-6/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-7/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-8/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-9/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-0/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-1/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-2/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-3/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-4/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-5/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-6/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-7/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-8/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-9/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-0/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-1/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-2/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-3/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-4/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-5/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-6/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-7/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-8/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-9/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-0/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-1/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-2/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-3/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-4/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-5/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-6/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-7/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-8/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-9/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-0/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-1/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-2/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-3/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-4/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-5/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-6/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-7/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-8/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-9/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-0/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-1/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-2/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-3/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-4/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-5/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-6/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-7/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-8/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-9/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-0/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-1/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-2/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-3/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-4/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-5/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-6/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-7/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-8/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-9/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-0/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-1/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-2/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-3/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-4/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-5/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-6/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-7/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-8/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-1/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-2/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-3/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-4/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-5/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-6/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-7/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-8/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-9/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-0/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-1/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-2/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-3/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-4/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-5/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-6/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-7/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-8/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-9/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-0/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-1/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-2/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-3/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-4/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-5/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-6/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-7/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-8/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-9/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-0/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-1/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-2/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-3/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-4/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-5/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-6/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-7/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-8/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-9/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-0/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-1/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-2/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-3/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-4/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-5/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-6/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-7/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-8/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-9/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-0/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-1/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-2/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-3/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-4/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-5/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-6/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-7/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-8/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-9/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-0/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-1/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-2/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-3/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-4/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-5/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-6/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-7/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-8/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-9/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-0/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-1/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-2/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-3/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-4/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-5/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-6/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-7/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-8/kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T108_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-1/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-2/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-3/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-4/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-5/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-6/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-7/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-8/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-9/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-0/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-1/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-2/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-3/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-4/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-5/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-6/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-7/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-8/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-9/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-0/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-1/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-2/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-3/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-4/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-5/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-6/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-7/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-8/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-9/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-0/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-1/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-2/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-3/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-4/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-5/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-6/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-7/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-8/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-9/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-0/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-1/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-2/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-3/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-4/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-5/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-6/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-7/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-8/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-9/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-0/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-1/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-2/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-3/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-4/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-5/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-6/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-7/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-8/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-9/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-0/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-1/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-2/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-3/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-4/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-5/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-6/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-7/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-8/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-9/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-0/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-1/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-2/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-3/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-4/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-5/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-6/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-7/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-8/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-1/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-2/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-3/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-4/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-5/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-6/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-7/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-8/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-9/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-0/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-1/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-2/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-3/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-4/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-5/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-6/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-7/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-8/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-9/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-0/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-1/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-2/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-3/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-4/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-5/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-6/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-7/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-8/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-9/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-0/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-1/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-2/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-3/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-4/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-5/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-6/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-7/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-8/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-9/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-0/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-1/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-2/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-3/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-4/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-5/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-6/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-7/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-8/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-9/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-0/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-1/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-2/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-3/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-4/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-5/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-6/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-7/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-8/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-9/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-0/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-1/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-2/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-3/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-4/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-5/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-6/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-7/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-8/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-9/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-0/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-1/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-2/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-3/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-4/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-5/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-6/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-7/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-8/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-1/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-2/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-3/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-4/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-5/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-6/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-7/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-8/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-9/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-0/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-1/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-2/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-3/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-4/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-5/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-6/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-7/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-8/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-9/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-0/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-1/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-2/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-3/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-4/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-5/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-6/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-7/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-8/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-9/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-0/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-1/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-2/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-3/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-4/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-5/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-6/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-7/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-8/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-9/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-0/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-1/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-2/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-3/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-4/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-5/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-6/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-7/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-8/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-9/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-0/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-1/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-2/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-3/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-4/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-5/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-6/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-7/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-8/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-9/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-0/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-1/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-2/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-3/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-4/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-5/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-6/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-7/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-8/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-9/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-0/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-1/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-2/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-3/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-4/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-5/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-6/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-7/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-8/kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T65_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-0-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-0-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-0-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-0-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-0-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-0-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-0-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-0-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-0-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-0-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-0-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-0-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-0-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-0-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-0-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-0-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-0-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-0-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-1-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-1-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-1-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-1-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-1-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-1-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-1-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-1-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-1-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-1-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-1-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-1-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-1-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-1-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-1-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-1-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-1-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-1-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-1-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-1-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-2-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-2-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-2-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-2-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-2-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-2-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-2-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-2-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-2-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-2-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-2-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-2-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-2-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-2-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-2-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-2-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-2-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-2-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-2-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-2-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-3-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-3-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-3-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-3-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-3-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-3-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-3-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-3-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-3-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-3-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-3-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-3-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-3-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-3-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-3-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-3-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-3-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-3-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-3-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-3-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-4-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-4-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-4-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-4-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-4-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-4-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-4-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-4-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-4-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-4-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-4-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-4-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-4-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-4-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-4-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-4-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-4-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-4-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-4-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-4-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-5-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-5-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-5-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-5-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-5-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-5-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-5-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-5-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-5-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-5-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-5-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-5-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-5-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-5-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-5-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-5-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-5-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-5-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-5-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-5-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-6-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-6-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-6-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-6-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-6-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-6-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-6-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-6-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-6-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-6-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-6-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-6-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-6-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-6-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-6-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-6-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-6-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-6-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-6-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-6-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-7-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-7-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-7-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-7-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-7-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-7-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-7-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-7-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-7-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-7-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-7-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-7-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-7-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-7-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-7-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-7-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-7-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L1-7-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-0-1/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-0-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-0-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-0-2/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-0-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-0-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-0-3/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-0-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-0-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-0-4/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-0-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-0-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-0-5/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-0-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-0-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-0-6/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-0-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-0-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-0-7/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-0-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-0-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-0-8/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-0-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-0-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-0-9/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-0-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-0-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-1-0/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-1-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-1-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-1-1/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-1-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-1-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-1-2/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-1-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-1-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-1-3/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-1-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-1-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-1-4/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-1-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-1-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-1-5/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-1-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-1-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-1-6/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-1-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-1-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-1-7/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-1-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-1-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-1-8/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-1-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-1-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-1-9/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-1-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-1-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-2-0/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-2-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-2-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-2-1/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-2-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-2-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-2-2/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-2-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-2-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-2-3/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-2-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-2-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-2-4/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-2-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-2-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-2-5/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-2-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-2-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-2-6/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-2-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-2-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-2-7/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-2-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-2-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-2-8/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-2-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-2-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-2-9/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-2-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-2-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-3-0/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-3-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-3-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-3-1/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-3-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-3-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-3-2/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-3-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-3-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-3-3/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-3-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-3-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-3-4/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-3-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-3-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-3-5/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-3-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-3-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-3-6/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-3-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-3-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-3-7/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-3-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-3-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-3-8/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-3-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-3-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-3-9/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-3-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-3-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-4-0/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-4-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-4-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-4-1/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-4-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-4-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-4-2/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-4-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-4-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-4-3/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-4-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-4-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-4-4/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-4-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-4-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-4-5/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-4-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-4-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-4-6/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-4-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-4-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-4-7/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-4-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-4-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-4-8/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-4-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-4-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-4-9/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-4-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-4-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-5-0/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-5-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-5-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-5-1/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-5-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-5-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-5-2/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-5-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-5-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-5-3/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-5-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-5-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-5-4/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-5-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-5-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-5-5/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-5-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-5-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-5-6/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-5-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-5-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-5-7/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-5-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-5-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-5-8/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-5-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-5-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-5-9/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-5-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-5-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-6-0/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-6-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-6-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-6-1/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-6-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-6-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-6-2/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-6-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-6-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-6-3/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-6-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-6-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-6-4/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-6-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-6-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-6-5/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-6-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-6-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-6-6/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-6-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-6-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-6-7/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-6-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-6-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-6-8/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-6-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-6-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-6-9/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-6-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-6-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-7-0/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-7-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-7-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-7-1/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-7-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-7-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-7-2/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-7-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-7-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-7-3/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-7-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-7-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-7-4/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-7-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-7-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-7-5/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-7-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-7-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-7-6/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-7-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-7-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-7-7/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-7-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-7-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-7-8/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-7-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L2-7-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-0-1/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-0-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-0-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-0-2/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-0-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-0-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-0-3/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-0-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-0-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-0-4/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-0-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-0-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-0-5/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-0-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-0-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-0-6/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-0-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-0-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-0-7/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-0-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-0-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-0-8/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-0-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-0-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-0-9/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-0-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-0-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-1-0/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-1-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-1-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-1-1/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-1-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-1-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-1-2/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-1-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-1-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-1-3/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-1-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-1-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-1-4/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-1-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-1-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-1-5/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-1-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-1-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-1-6/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-1-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-1-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-1-7/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-1-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-1-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-1-8/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-1-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-1-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-1-9/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-1-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-1-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-2-0/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-2-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-2-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-2-1/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-2-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-2-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-2-2/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-2-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-2-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-2-3/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-2-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-2-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-2-4/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-2-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-2-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-2-5/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-2-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-2-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-2-6/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-2-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-2-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-2-7/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-2-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-2-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-2-8/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-2-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-2-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-2-9/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-2-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-2-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-3-0/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-3-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-3-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-3-1/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-3-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-3-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-3-2/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-3-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-3-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-3-3/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-3-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-3-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-3-4/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-3-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-3-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-3-5/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-3-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-3-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-3-6/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-3-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-3-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-3-7/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-3-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-3-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-3-8/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-3-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-3-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-3-9/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-3-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-3-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-4-0/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-4-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-4-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-4-1/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-4-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-4-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-4-2/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-4-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-4-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-4-3/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-4-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-4-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-4-4/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-4-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-4-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-4-5/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-4-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-4-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-4-6/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-4-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-4-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-4-7/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-4-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-4-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-4-8/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-4-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-4-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-4-9/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-4-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-4-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-5-0/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-5-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-5-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-5-1/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-5-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-5-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-5-2/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-5-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-5-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-5-3/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-5-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-5-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-5-4/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-5-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-5-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-5-5/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-5-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-5-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-5-6/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-5-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-5-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-5-7/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-5-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-5-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-5-8/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-5-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-5-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-5-9/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-5-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-5-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-6-0/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-6-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-6-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-6-1/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-6-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-6-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-6-2/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-6-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-6-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-6-3/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-6-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-6-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-6-4/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-6-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-6-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-6-5/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-6-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-6-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-6-6/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-6-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-6-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-6-7/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-6-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-6-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-6-8/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-6-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-6-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-6-9/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-6-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-6-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-7-0/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-7-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-7-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-7-1/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-7-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-7-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-7-2/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-7-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-7-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-7-3/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-7-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-7-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-7-4/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-7-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-7-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-7-5/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-7-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-7-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-7-6/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-7-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-7-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-7-7/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-7-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-7-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-7-8/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-7-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L3-7-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-0-1/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-0-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-0-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-0-2/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-0-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-0-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-0-3/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-0-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-0-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-0-4/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-0-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-0-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-0-5/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-0-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-0-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-0-6/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-0-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-0-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-0-7/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-0-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-0-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-0-8/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-0-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-0-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-0-9/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-0-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-0-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-1-0/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-1-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-1-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-1-1/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-1-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-1-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-1-2/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-1-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-1-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-1-3/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-1-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-1-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-1-4/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-1-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-1-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-1-5/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-1-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-1-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-1-6/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-1-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-1-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-1-7/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-1-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-1-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-1-8/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-1-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-1-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-1-9/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-1-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-1-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-2-0/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-2-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-2-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-2-1/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-2-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-2-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-2-2/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-2-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-2-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-2-3/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-2-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-2-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-2-4/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-2-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-2-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-2-5/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-2-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-2-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-2-6/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-2-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-2-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-2-7/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-2-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-2-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-2-8/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-2-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-2-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-2-9/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-2-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-2-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-3-0/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-3-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-3-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-3-1/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-3-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-3-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-3-2/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-3-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-3-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-3-3/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-3-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-3-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-3-4/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-3-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-3-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-3-5/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-3-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-3-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-3-6/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-3-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-3-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-3-7/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-3-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-3-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-3-8/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-3-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-3-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-3-9/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-3-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-3-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-4-0/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-4-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-4-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-4-1/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-4-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-4-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-4-2/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-4-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-4-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-4-3/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-4-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-4-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-4-4/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-4-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-4-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-4-5/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-4-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-4-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-4-6/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-4-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-4-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-4-7/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-4-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-4-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-4-8/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-4-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-4-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-4-9/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-4-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-4-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-5-0/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-5-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-5-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-5-1/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-5-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-5-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-5-2/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-5-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-5-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-5-3/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-5-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-5-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-5-4/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-5-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-5-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-5-5/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-5-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-5-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-5-6/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-5-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-5-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-5-7/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-5-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-5-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-5-8/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-5-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-5-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-5-9/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-5-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-5-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-6-0/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-6-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-6-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-6-1/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-6-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-6-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-6-2/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-6-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-6-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-6-3/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-6-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-6-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-6-4/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-6-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-6-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-6-5/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-6-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-6-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-6-6/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-6-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-6-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-6-7/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-6-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-6-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-6-8/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-6-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-6-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-6-9/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-6-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-6-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-7-0/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-7-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-7-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-7-1/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-7-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-7-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-7-2/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-7-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-7-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-7-3/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-7-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-7-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-7-4/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-7-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-7-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-7-5/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-7-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-7-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-7-6/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-7-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-7-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-7-7/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-7-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-7-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-7-8/kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-7-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b20_Kidney_PCW19 2 -revcomp | gzip > L4-7-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T181_b20_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-0-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-1-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-2-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-3-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-4-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-5-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-6-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L1-7-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-1/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-2/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-3/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-4/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-5/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-6/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-7/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-8/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-9/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-0-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-0/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-1/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-2/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-3/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-4/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-5/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-6/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-7/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-8/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-9/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-1-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-0/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-1/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-2/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-3/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-4/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-5/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-6/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-7/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-8/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-9/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-2-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-0/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-1/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-2/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-3/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-4/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-5/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-6/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-7/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-8/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-9/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-3-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-0/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-1/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-2/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-3/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-4/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-5/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-6/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-7/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-8/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-9/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-4-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-0/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-1/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-2/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-3/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-4/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-5/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-6/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-7/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-8/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-9/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-5-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-0/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-1/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-2/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-3/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-4/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-5/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-6/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-7/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-8/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-9/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-6-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-0/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-1/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-2/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-3/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-4/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-5/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-6/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-7/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-8/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L2-7-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-1/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-2/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-3/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-4/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-5/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-6/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-7/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-8/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-9/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-0-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-0/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-1/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-2/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-3/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-4/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-5/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-6/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-7/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-8/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-9/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-1-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-0/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-1/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-2/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-3/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-4/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-5/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-6/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-7/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-8/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-9/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-2-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-0/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-1/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-2/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-3/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-4/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-5/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-6/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-7/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-8/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-9/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-3-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-0/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-1/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-2/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-3/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-4/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-5/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-6/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-7/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-8/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-9/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-4-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-0/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-1/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-2/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-3/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-4/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-5/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-6/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-7/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-8/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-9/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-5-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-0/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-1/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-2/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-3/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-4/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-5/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-6/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-7/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-8/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-9/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-6-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-0/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-1/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-2/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-3/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-4/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-5/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-6/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-7/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-8/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L3-7-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-1/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-2/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-3/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-4/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-5/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-6/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-7/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-8/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-9/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-0-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-0/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-1/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-2/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-3/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-4/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-5/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-6/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-7/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-8/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-9/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-1-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-0/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-1/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-2/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-3/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-4/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-5/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-6/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-7/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-8/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-9/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-2-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-0/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-1/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-2/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-3/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-4/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-5/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-6/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-7/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-8/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-9/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-3-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-0/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-1/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-2/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-3/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-4/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-5/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-6/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-7/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-8/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-9/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-4-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-0/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-1/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-2/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-3/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-4/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-5/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-6/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-7/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-8/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-9/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-5-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-0/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-1/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-2/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-3/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-4/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-5/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-6/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-7/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-8/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-9/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-6-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-0/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-1/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-2/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-3/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-4/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-5/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-6/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-7/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-8/kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T271_b20_Kidney_PCW18 2 -revcomp | gzip > L4-7-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T271_b20_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-0-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-0-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-0-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-0-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-0-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-0-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-0-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-0-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-0-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-0-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-0-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-0-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-0-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-0-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-0-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-0-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-0-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-0-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-1-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-1-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-1-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-1-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-1-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-1-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-1-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-1-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-1-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-1-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-1-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-1-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-1-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-1-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-1-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-1-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-1-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-1-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-1-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-1-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-2-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-2-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-2-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-2-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-2-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-2-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-2-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-2-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-2-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-2-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-2-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-2-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-2-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-2-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-2-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-2-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-2-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-2-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-2-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-2-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-3-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-3-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-3-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-3-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-3-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-3-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-3-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-3-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-3-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-3-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-3-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-3-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-3-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-3-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-3-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-3-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-3-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-3-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-3-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-3-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-4-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-4-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-4-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-4-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-4-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-4-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-4-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-4-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-4-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-4-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-4-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-4-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-4-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-4-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-4-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-4-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-4-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-4-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-4-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-4-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-5-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-5-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-5-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-5-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-5-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-5-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-5-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-5-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-5-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-5-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-5-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-5-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-5-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-5-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-5-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-5-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-5-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-5-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-5-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-5-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-6-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-6-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-6-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-6-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-6-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-6-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-6-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-6-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-6-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-6-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-6-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-6-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-6-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-6-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-6-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-6-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-6-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-6-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-6-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-6-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-7-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-7-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-7-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-7-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-7-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-7-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-7-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-7-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-7-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-7-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-7-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-7-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-7-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-7-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-7-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-7-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-7-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L1-7-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-0-1/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-0-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-0-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-0-2/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-0-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-0-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-0-3/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-0-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-0-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-0-4/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-0-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-0-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-0-5/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-0-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-0-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-0-6/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-0-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-0-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-0-7/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-0-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-0-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-0-8/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-0-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-0-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-0-9/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-0-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-0-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-1-0/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-1-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-1-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-1-1/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-1-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-1-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-1-2/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-1-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-1-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-1-3/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-1-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-1-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-1-4/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-1-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-1-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-1-5/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-1-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-1-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-1-6/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-1-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-1-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-1-7/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-1-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-1-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-1-8/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-1-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-1-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-1-9/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-1-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-1-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-2-0/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-2-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-2-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-2-1/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-2-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-2-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-2-2/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-2-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-2-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-2-3/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-2-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-2-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-2-4/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-2-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-2-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-2-5/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-2-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-2-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-2-6/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-2-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-2-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-2-7/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-2-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-2-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-2-8/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-2-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-2-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-2-9/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-2-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-2-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-3-0/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-3-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-3-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-3-1/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-3-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-3-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-3-2/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-3-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-3-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-3-3/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-3-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-3-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-3-4/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-3-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-3-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-3-5/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-3-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-3-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-3-6/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-3-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-3-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-3-7/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-3-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-3-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-3-8/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-3-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-3-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-3-9/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-3-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-3-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-4-0/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-4-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-4-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-4-1/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-4-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-4-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-4-2/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-4-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-4-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-4-3/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-4-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-4-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-4-4/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-4-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-4-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-4-5/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-4-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-4-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-4-6/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-4-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-4-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-4-7/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-4-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-4-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-4-8/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-4-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-4-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-4-9/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-4-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-4-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-5-0/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-5-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-5-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-5-1/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-5-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-5-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-5-2/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-5-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-5-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-5-3/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-5-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-5-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-5-4/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-5-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-5-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-5-5/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-5-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-5-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-5-6/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-5-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-5-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-5-7/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-5-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-5-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-5-8/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-5-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-5-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-5-9/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-5-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-5-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-6-0/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-6-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-6-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-6-1/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-6-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-6-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-6-2/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-6-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-6-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-6-3/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-6-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-6-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-6-4/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-6-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-6-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-6-5/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-6-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-6-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-6-6/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-6-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-6-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-6-7/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-6-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-6-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-6-8/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-6-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-6-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-6-9/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-6-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-6-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-7-0/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-7-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-7-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-7-1/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-7-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-7-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-7-2/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-7-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-7-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-7-3/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-7-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-7-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-7-4/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-7-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-7-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-7-5/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-7-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-7-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-7-6/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-7-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-7-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-7-7/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-7-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-7-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-7-8/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-7-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L2-7-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-0-1/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-0-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-0-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-0-2/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-0-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-0-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-0-3/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-0-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-0-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-0-4/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-0-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-0-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-0-5/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-0-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-0-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-0-6/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-0-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-0-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-0-7/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-0-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-0-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-0-8/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-0-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-0-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-0-9/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-0-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-0-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-1-0/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-1-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-1-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-1-1/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-1-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-1-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-1-2/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-1-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-1-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-1-3/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-1-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-1-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-1-4/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-1-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-1-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-1-5/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-1-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-1-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-1-6/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-1-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-1-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-1-7/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-1-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-1-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-1-8/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-1-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-1-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-1-9/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-1-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-1-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-2-0/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-2-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-2-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-2-1/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-2-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-2-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-2-2/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-2-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-2-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-2-3/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-2-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-2-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-2-4/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-2-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-2-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-2-5/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-2-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-2-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-2-6/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-2-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-2-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-2-7/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-2-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-2-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-2-8/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-2-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-2-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-2-9/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-2-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-2-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-3-0/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-3-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-3-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-3-1/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-3-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-3-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-3-2/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-3-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-3-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-3-3/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-3-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-3-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-3-4/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-3-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-3-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-3-5/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-3-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-3-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-3-6/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-3-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-3-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-3-7/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-3-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-3-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-3-8/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-3-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-3-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-3-9/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-3-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-3-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-4-0/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-4-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-4-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-4-1/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-4-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-4-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-4-2/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-4-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-4-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-4-3/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-4-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-4-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-4-4/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-4-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-4-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-4-5/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-4-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-4-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-4-6/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-4-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-4-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-4-7/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-4-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-4-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-4-8/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-4-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-4-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-4-9/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-4-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-4-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-5-0/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-5-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-5-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-5-1/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-5-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-5-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-5-2/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-5-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-5-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-5-3/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-5-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-5-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-5-4/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-5-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-5-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-5-5/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-5-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-5-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-5-6/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-5-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-5-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-5-7/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-5-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-5-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-5-8/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-5-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-5-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-5-9/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-5-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-5-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-6-0/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-6-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-6-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-6-1/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-6-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-6-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-6-2/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-6-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-6-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-6-3/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-6-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-6-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-6-4/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-6-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-6-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-6-5/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-6-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-6-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-6-6/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-6-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-6-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-6-7/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-6-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-6-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-6-8/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-6-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-6-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-6-9/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-6-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-6-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-7-0/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-7-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-7-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-7-1/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-7-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-7-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-7-2/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-7-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-7-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-7-3/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-7-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-7-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-7-4/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-7-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-7-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-7-5/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-7-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-7-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-7-6/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-7-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-7-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-7-7/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-7-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-7-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-7-8/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-7-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L3-7-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-0-1/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-0-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-0-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-0-2/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-0-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-0-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-0-3/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-0-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-0-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-0-4/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-0-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-0-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-0-5/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-0-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-0-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-0-6/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-0-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-0-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-0-7/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-0-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-0-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-0-8/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-0-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-0-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-0-9/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-0-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-0-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-1-0/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-1-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-1-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-1-1/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-1-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-1-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-1-2/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-1-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-1-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-1-3/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-1-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-1-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-1-4/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-1-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-1-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-1-5/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-1-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-1-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-1-6/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-1-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-1-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-1-7/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-1-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-1-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-1-8/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-1-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-1-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-1-9/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-1-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-1-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-2-0/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-2-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-2-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-2-1/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-2-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-2-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-2-2/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-2-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-2-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-2-3/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-2-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-2-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-2-4/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-2-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-2-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-2-5/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-2-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-2-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-2-6/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-2-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-2-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-2-7/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-2-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-2-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-2-8/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-2-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-2-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-2-9/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-2-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-2-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-3-0/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-3-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-3-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-3-1/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-3-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-3-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-3-2/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-3-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-3-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-3-3/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-3-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-3-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-3-4/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-3-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-3-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-3-5/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-3-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-3-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-3-6/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-3-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-3-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-3-7/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-3-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-3-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-3-8/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-3-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-3-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-3-9/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-3-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-3-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-4-0/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-4-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-4-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-4-1/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-4-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-4-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-4-2/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-4-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-4-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-4-3/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-4-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-4-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-4-4/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-4-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-4-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-4-5/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-4-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-4-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-4-6/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-4-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-4-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-4-7/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-4-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-4-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-4-8/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-4-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-4-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-4-9/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-4-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-4-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-5-0/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-5-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-5-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-5-1/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-5-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-5-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-5-2/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-5-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-5-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-5-3/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-5-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-5-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-5-4/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-5-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-5-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-5-5/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-5-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-5-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-5-6/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-5-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-5-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-5-7/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-5-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-5-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-5-8/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-5-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-5-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-5-9/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-5-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-5-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-6-0/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-6-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-6-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-6-1/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-6-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-6-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-6-2/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-6-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-6-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-6-3/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-6-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-6-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-6-4/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-6-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-6-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-6-5/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-6-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-6-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-6-6/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-6-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-6-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-6-7/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-6-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-6-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-6-8/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-6-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-6-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-6-9/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-6-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-6-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-7-0/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-7-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-7-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-7-1/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-7-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-7-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-7-2/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-7-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-7-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-7-3/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-7-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-7-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-7-4/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-7-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-7-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-7-5/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-7-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-7-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-7-6/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-7-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-7-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-7-7/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-7-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-7-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-7-8/kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-7-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b20_Kidney_PCW21 2 -revcomp | gzip > L4-7-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T309_b20_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-0-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-0-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-0-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-0-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-0-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-0-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-0-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-0-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-0-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-0-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-0-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-0-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-0-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-0-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-0-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-0-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-0-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-0-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-1-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-1-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-1-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-1-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-1-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-1-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-1-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-1-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-1-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-1-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-1-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-1-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-1-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-1-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-1-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-1-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-1-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-1-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-1-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-1-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-2-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-2-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-2-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-2-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-2-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-2-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-2-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-2-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-2-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-2-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-2-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-2-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-2-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-2-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-2-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-2-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-2-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-2-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-2-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-2-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-3-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-3-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-3-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-3-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-3-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-3-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-3-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-3-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-3-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-3-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-3-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-3-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-3-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-3-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-3-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-3-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-3-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-3-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-3-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-3-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-4-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-4-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-4-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-4-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-4-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-4-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-4-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-4-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-4-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-4-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-4-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-4-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-4-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-4-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-4-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-4-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-4-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-4-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-4-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-4-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-5-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-5-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-5-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-5-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-5-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-5-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-5-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-5-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-5-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-5-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-5-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-5-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-5-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-5-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-5-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-5-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-5-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-5-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-5-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-5-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-6-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-6-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-6-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-6-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-6-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-6-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-6-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-6-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-6-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-6-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-6-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-6-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-6-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-6-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-6-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-6-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-6-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-6-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-6-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-6-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-7-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-7-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-7-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-7-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-7-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-7-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-7-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-7-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-7-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-7-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-7-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-7-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-7-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-7-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-7-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-7-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-7-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L1-7-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-0-1/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-0-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-0-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-0-2/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-0-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-0-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-0-3/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-0-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-0-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-0-4/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-0-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-0-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-0-5/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-0-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-0-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-0-6/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-0-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-0-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-0-7/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-0-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-0-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-0-8/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-0-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-0-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-0-9/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-0-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-0-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-1-0/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-1-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-1-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-1-1/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-1-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-1-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-1-2/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-1-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-1-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-1-3/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-1-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-1-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-1-4/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-1-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-1-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-1-5/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-1-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-1-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-1-6/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-1-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-1-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-1-7/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-1-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-1-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-1-8/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-1-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-1-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-1-9/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-1-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-1-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-2-0/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-2-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-2-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-2-1/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-2-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-2-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-2-2/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-2-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-2-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-2-3/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-2-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-2-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-2-4/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-2-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-2-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-2-5/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-2-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-2-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-2-6/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-2-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-2-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-2-7/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-2-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-2-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-2-8/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-2-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-2-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-2-9/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-2-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-2-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-3-0/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-3-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-3-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-3-1/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-3-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-3-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-3-2/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-3-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-3-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-3-3/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-3-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-3-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-3-4/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-3-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-3-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-3-5/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-3-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-3-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-3-6/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-3-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-3-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-3-7/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-3-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-3-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-3-8/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-3-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-3-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-3-9/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-3-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-3-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-4-0/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-4-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-4-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-4-1/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-4-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-4-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-4-2/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-4-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-4-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-4-3/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-4-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-4-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-4-4/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-4-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-4-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-4-5/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-4-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-4-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-4-6/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-4-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-4-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-4-7/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-4-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-4-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-4-8/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-4-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-4-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-4-9/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-4-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-4-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-5-0/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-5-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-5-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-5-1/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-5-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-5-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-5-2/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-5-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-5-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-5-3/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-5-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-5-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-5-4/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-5-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-5-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-5-5/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-5-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-5-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-5-6/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-5-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-5-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-5-7/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-5-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-5-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-5-8/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-5-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-5-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-5-9/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-5-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-5-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-6-0/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-6-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-6-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-6-1/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-6-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-6-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-6-2/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-6-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-6-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-6-3/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-6-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-6-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-6-4/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-6-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-6-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-6-5/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-6-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-6-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-6-6/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-6-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-6-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-6-7/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-6-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-6-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-6-8/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-6-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-6-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-6-9/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-6-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-6-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-7-0/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-7-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-7-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-7-1/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-7-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-7-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-7-2/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-7-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-7-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-7-3/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-7-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-7-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-7-4/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-7-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-7-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-7-5/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-7-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-7-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-7-6/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-7-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-7-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-7-7/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-7-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-7-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-7-8/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-7-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L2-7-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-0-1/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-0-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-0-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-0-2/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-0-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-0-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-0-3/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-0-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-0-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-0-4/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-0-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-0-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-0-5/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-0-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-0-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-0-6/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-0-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-0-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-0-7/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-0-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-0-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-0-8/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-0-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-0-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-0-9/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-0-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-0-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-1-0/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-1-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-1-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-1-1/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-1-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-1-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-1-2/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-1-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-1-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-1-3/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-1-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-1-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-1-4/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-1-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-1-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-1-5/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-1-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-1-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-1-6/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-1-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-1-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-1-7/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-1-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-1-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-1-8/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-1-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-1-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-1-9/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-1-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-1-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-2-0/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-2-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-2-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-2-1/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-2-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-2-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-2-2/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-2-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-2-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-2-3/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-2-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-2-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-2-4/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-2-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-2-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-2-5/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-2-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-2-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-2-6/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-2-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-2-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-2-7/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-2-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-2-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-2-8/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-2-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-2-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-2-9/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-2-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-2-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-3-0/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-3-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-3-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-3-1/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-3-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-3-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-3-2/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-3-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-3-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-3-3/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-3-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-3-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-3-4/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-3-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-3-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-3-5/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-3-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-3-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-3-6/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-3-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-3-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-3-7/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-3-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-3-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-3-8/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-3-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-3-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-3-9/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-3-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-3-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-4-0/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-4-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-4-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-4-1/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-4-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-4-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-4-2/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-4-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-4-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-4-3/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-4-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-4-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-4-4/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-4-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-4-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-4-5/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-4-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-4-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-4-6/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-4-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-4-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-4-7/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-4-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-4-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-4-8/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-4-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-4-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-4-9/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-4-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-4-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-5-0/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-5-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-5-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-5-1/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-5-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-5-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-5-2/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-5-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-5-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-5-3/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-5-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-5-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-5-4/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-5-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-5-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-5-5/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-5-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-5-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-5-6/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-5-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-5-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-5-7/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-5-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-5-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-5-8/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-5-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-5-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-5-9/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-5-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-5-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-6-0/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-6-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-6-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-6-1/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-6-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-6-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-6-2/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-6-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-6-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-6-3/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-6-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-6-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-6-4/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-6-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-6-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-6-5/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-6-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-6-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-6-6/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-6-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-6-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-6-7/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-6-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-6-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-6-8/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-6-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-6-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-6-9/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-6-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-6-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-7-0/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-7-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-7-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-7-1/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-7-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-7-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-7-2/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-7-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-7-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-7-3/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-7-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-7-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-7-4/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-7-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-7-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-7-5/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-7-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-7-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-7-6/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-7-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-7-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-7-7/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-7-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-7-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-7-8/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-7-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L3-7-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-0-1/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-0-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-0-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-0-2/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-0-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-0-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-0-3/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-0-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-0-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-0-4/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-0-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-0-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-0-5/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-0-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-0-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-0-6/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-0-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-0-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-0-7/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-0-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-0-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-0-8/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-0-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-0-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-0-9/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-0-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-0-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-1-0/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-1-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-1-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-1-1/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-1-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-1-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-1-2/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-1-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-1-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-1-3/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-1-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-1-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-1-4/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-1-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-1-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-1-5/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-1-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-1-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-1-6/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-1-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-1-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-1-7/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-1-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-1-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-1-8/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-1-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-1-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-1-9/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-1-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-1-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-2-0/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-2-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-2-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-2-1/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-2-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-2-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-2-2/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-2-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-2-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-2-3/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-2-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-2-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-2-4/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-2-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-2-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-2-5/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-2-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-2-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-2-6/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-2-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-2-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-2-7/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-2-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-2-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-2-8/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-2-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-2-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-2-9/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-2-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-2-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-3-0/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-3-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-3-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-3-1/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-3-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-3-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-3-2/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-3-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-3-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-3-3/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-3-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-3-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-3-4/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-3-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-3-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-3-5/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-3-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-3-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-3-6/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-3-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-3-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-3-7/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-3-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-3-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-3-8/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-3-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-3-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-3-9/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-3-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-3-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-4-0/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-4-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-4-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-4-1/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-4-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-4-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-4-2/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-4-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-4-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-4-3/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-4-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-4-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-4-4/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-4-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-4-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-4-5/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-4-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-4-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-4-6/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-4-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-4-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-4-7/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-4-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-4-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-4-8/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-4-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-4-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-4-9/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-4-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-4-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-5-0/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-5-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-5-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-5-1/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-5-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-5-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-5-2/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-5-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-5-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-5-3/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-5-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-5-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-5-4/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-5-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-5-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-5-5/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-5-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-5-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-5-6/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-5-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-5-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-5-7/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-5-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-5-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-5-8/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-5-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-5-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-5-9/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-5-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-5-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-6-0/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-6-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-6-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-6-1/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-6-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-6-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-6-2/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-6-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-6-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-6-3/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-6-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-6-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-6-4/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-6-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-6-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-6-5/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-6-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-6-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-6-6/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-6-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-6-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-6-7/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-6-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-6-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-6-8/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-6-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-6-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-6-9/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-6-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-6-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-7-0/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-7-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-7-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-7-1/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-7-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-7-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-7-2/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-7-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-7-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-7-3/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-7-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-7-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-7-4/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-7-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-7-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-7-5/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-7-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-7-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-7-6/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-7-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-7-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-7-7/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-7-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-7-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-7-8/kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-7-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b20_Kidney_PCW20 2 -revcomp | gzip > L4-7-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T359_b20_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-0-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-0-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-0-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-0-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-0-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-0-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-0-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-0-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-0-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-0-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-0-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-0-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-0-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-0-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-0-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-0-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-0-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-0-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-1-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-1-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-1-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-1-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-1-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-1-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-1-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-1-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-1-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-1-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-1-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-1-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-1-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-1-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-1-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-1-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-1-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-1-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-1-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-1-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-2-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-2-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-2-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-2-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-2-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-2-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-2-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-2-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-2-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-2-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-2-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-2-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-2-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-2-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-2-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-2-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-2-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-2-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-2-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-2-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-3-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-3-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-3-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-3-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-3-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-3-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-3-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-3-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-3-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-3-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-3-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-3-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-3-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-3-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-3-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-3-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-3-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-3-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-3-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-3-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-4-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-4-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-4-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-4-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-4-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-4-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-4-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-4-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-4-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-4-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-4-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-4-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-4-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-4-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-4-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-4-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-4-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-4-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-4-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-4-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-5-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-5-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-5-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-5-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-5-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-5-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-5-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-5-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-5-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-5-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-5-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-5-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-5-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-5-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-5-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-5-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-5-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-5-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-5-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-5-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-6-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-6-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-6-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-6-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-6-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-6-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-6-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-6-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-6-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-6-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-6-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-6-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-6-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-6-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-6-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-6-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-6-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-6-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-6-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-6-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-7-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-7-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-7-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-7-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-7-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-7-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-7-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-7-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-7-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-7-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-7-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-7-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-7-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-7-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-7-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-7-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-7-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L1-7-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-0-1/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-0-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-0-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-0-2/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-0-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-0-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-0-3/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-0-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-0-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-0-4/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-0-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-0-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-0-5/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-0-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-0-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-0-6/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-0-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-0-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-0-7/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-0-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-0-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-0-8/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-0-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-0-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-0-9/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-0-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-0-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-1-0/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-1-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-1-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-1-1/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-1-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-1-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-1-2/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-1-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-1-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-1-3/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-1-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-1-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-1-4/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-1-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-1-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-1-5/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-1-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-1-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-1-6/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-1-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-1-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-1-7/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-1-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-1-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-1-8/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-1-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-1-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-1-9/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-1-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-1-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-2-0/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-2-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-2-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-2-1/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-2-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-2-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-2-2/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-2-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-2-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-2-3/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-2-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-2-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-2-4/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-2-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-2-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-2-5/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-2-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-2-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-2-6/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-2-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-2-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-2-7/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-2-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-2-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-2-8/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-2-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-2-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-2-9/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-2-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-2-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-3-0/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-3-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-3-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-3-1/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-3-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-3-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-3-2/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-3-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-3-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-3-3/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-3-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-3-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-3-4/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-3-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-3-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-3-5/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-3-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-3-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-3-6/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-3-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-3-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-3-7/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-3-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-3-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-3-8/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-3-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-3-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-3-9/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-3-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-3-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-4-0/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-4-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-4-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-4-1/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-4-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-4-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-4-2/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-4-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-4-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-4-3/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-4-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-4-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-4-4/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-4-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-4-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-4-5/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-4-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-4-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-4-6/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-4-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-4-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-4-7/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-4-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-4-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-4-8/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-4-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-4-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-4-9/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-4-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-4-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-5-0/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-5-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-5-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-5-1/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-5-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-5-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-5-2/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-5-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-5-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-5-3/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-5-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-5-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-5-4/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-5-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-5-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-5-5/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-5-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-5-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-5-6/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-5-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-5-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-5-7/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-5-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-5-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-5-8/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-5-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-5-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-5-9/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-5-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-5-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-6-0/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-6-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-6-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-6-1/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-6-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-6-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-6-2/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-6-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-6-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-6-3/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-6-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-6-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-6-4/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-6-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-6-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-6-5/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-6-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-6-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-6-6/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-6-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-6-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-6-7/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-6-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-6-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-6-8/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-6-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-6-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-6-9/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-6-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-6-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-7-0/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-7-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-7-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-7-1/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-7-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-7-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-7-2/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-7-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-7-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-7-3/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-7-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-7-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-7-4/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-7-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-7-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-7-5/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-7-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-7-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-7-6/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-7-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-7-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-7-7/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-7-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-7-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-7-8/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-7-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L2-7-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-0-1/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-0-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-0-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-0-2/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-0-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-0-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-0-3/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-0-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-0-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-0-4/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-0-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-0-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-0-5/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-0-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-0-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-0-6/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-0-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-0-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-0-7/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-0-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-0-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-0-8/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-0-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-0-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-0-9/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-0-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-0-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-1-0/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-1-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-1-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-1-1/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-1-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-1-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-1-2/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-1-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-1-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-1-3/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-1-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-1-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-1-4/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-1-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-1-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-1-5/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-1-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-1-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-1-6/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-1-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-1-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-1-7/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-1-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-1-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-1-8/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-1-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-1-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-1-9/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-1-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-1-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-2-0/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-2-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-2-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-2-1/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-2-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-2-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-2-2/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-2-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-2-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-2-3/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-2-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-2-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-2-4/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-2-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-2-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-2-5/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-2-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-2-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-2-6/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-2-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-2-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-2-7/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-2-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-2-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-2-8/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-2-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-2-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-2-9/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-2-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-2-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-3-0/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-3-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-3-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-3-1/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-3-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-3-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-3-2/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-3-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-3-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-3-3/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-3-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-3-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-3-4/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-3-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-3-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-3-5/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-3-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-3-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-3-6/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-3-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-3-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-3-7/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-3-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-3-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-3-8/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-3-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-3-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-3-9/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-3-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-3-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-4-0/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-4-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-4-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-4-1/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-4-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-4-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-4-2/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-4-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-4-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-4-3/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-4-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-4-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-4-4/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-4-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-4-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-4-5/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-4-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-4-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-4-6/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-4-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-4-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-4-7/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-4-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-4-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-4-8/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-4-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-4-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-4-9/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-4-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-4-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-5-0/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-5-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-5-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-5-1/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-5-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-5-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-5-2/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-5-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-5-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-5-3/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-5-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-5-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-5-4/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-5-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-5-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-5-5/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-5-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-5-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-5-6/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-5-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-5-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-5-7/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-5-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-5-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-5-8/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-5-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-5-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-5-9/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-5-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-5-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-6-0/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-6-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-6-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-6-1/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-6-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-6-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-6-2/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-6-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-6-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-6-3/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-6-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-6-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-6-4/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-6-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-6-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-6-5/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-6-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-6-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-6-6/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-6-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-6-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-6-7/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-6-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-6-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-6-8/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-6-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-6-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-6-9/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-6-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-6-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-7-0/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-7-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-7-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-7-1/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-7-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-7-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-7-2/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-7-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-7-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-7-3/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-7-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-7-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-7-4/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-7-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-7-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-7-5/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-7-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-7-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-7-6/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-7-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-7-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-7-7/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-7-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-7-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-7-8/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-7-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L3-7-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-0-1/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-0-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-0-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-0-2/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-0-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-0-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-0-3/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-0-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-0-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-0-4/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-0-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-0-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-0-5/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-0-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-0-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-0-6/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-0-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-0-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-0-7/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-0-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-0-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-0-8/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-0-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-0-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-0-9/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-0-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-0-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-1-0/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-1-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-1-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-1-1/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-1-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-1-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-1-2/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-1-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-1-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-1-3/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-1-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-1-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-1-4/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-1-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-1-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-1-5/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-1-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-1-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-1-6/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-1-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-1-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-1-7/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-1-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-1-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-1-8/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-1-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-1-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-1-9/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-1-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-1-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-2-0/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-2-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-2-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-2-1/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-2-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-2-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-2-2/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-2-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-2-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-2-3/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-2-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-2-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-2-4/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-2-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-2-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-2-5/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-2-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-2-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-2-6/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-2-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-2-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-2-7/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-2-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-2-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-2-8/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-2-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-2-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-2-9/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-2-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-2-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-3-0/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-3-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-3-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-3-1/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-3-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-3-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-3-2/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-3-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-3-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-3-3/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-3-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-3-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-3-4/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-3-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-3-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-3-5/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-3-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-3-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-3-6/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-3-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-3-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-3-7/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-3-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-3-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-3-8/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-3-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-3-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-3-9/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-3-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-3-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-4-0/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-4-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-4-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-4-1/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-4-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-4-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-4-2/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-4-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-4-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-4-3/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-4-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-4-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-4-4/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-4-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-4-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-4-5/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-4-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-4-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-4-6/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-4-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-4-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-4-7/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-4-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-4-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-4-8/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-4-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-4-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-4-9/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-4-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-4-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-5-0/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-5-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-5-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-5-1/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-5-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-5-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-5-2/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-5-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-5-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-5-3/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-5-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-5-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-5-4/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-5-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-5-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-5-5/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-5-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-5-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-5-6/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-5-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-5-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-5-7/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-5-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-5-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-5-8/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-5-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-5-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-5-9/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-5-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-5-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-6-0/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-6-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-6-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-6-1/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-6-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-6-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-6-2/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-6-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-6-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-6-3/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-6-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-6-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-6-4/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-6-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-6-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-6-5/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-6-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-6-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-6-6/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-6-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-6-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-6-7/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-6-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-6-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-6-8/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-6-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-6-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-6-9/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-6-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-6-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-7-0/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-7-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-7-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-7-1/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-7-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-7-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-7-2/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-7-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-7-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-7-3/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-7-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-7-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-7-4/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-7-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-7-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-7-5/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-7-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-7-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-7-6/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-7-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-7-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-7-7/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-7-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-7-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-7-8/kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-7-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b20_Kidney_PCW15 2 -revcomp | gzip > L4-7-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T373_b20_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-9/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-9/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-0/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-0/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-1/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-1/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-2/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-2/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-3/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-3/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-4/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-4/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-5/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-5/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-6/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-6/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-7/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-7/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-8/SL321_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-8/SL322_b20_RNA_kidneyredo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-0-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-1-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-2-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-3-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-4-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-5-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-6-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L1-7-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-1/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-2/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-3/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-4/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-5/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-6/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-7/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-8/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-9/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-0-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-0/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-1/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-2/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-3/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-4/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-5/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-6/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-7/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-8/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-9/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-1-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-0/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-1/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-2/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-3/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-4/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-5/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-6/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-7/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-8/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-9/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-2-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-0/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-1/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-2/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-3/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-4/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-5/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-6/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-7/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-8/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-9/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-3-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-0/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-1/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-2/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-3/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-4/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-5/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-6/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-7/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-8/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-9/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-4-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-0/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-1/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-2/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-3/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-4/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-5/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-6/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-7/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-8/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-9/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-5-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-0/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-1/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-2/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-3/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-4/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-5/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-6/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-7/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-8/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-9/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-6-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-0/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-1/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-2/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-3/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-4/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-5/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-6/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-7/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-8/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L2-7-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-1/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-2/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-3/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-4/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-5/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-6/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-7/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-8/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-9/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-0-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-0/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-1/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-2/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-3/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-4/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-5/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-6/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-7/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-8/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-9/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-1-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-0/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-1/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-2/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-3/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-4/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-5/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-6/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-7/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-8/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-9/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-2-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-0/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-1/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-2/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-3/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-4/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-5/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-6/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-7/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-8/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-9/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-3-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-0/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-1/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-2/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-3/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-4/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-5/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-6/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-7/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-8/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-9/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-4-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-0/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-1/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-2/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-3/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-4/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-5/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-6/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-7/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-8/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-9/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-5-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-0/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-1/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-2/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-3/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-4/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-5/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-6/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-7/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-8/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-9/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-6-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-0/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-1/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-2/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-3/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-4/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-5/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-6/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-7/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-8/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L3-7-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-1/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-2/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-3/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-4/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-5/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-6/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-7/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-8/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-9/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-0-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-0/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-1/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-2/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-3/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-4/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-5/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-6/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-7/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-8/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-9/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-1-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-0/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-1/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-2/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-3/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-4/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-5/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-6/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-7/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-8/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-9/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-2-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-0/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-1/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-2/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-3/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-4/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-5/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-6/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-7/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-8/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-9/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-3-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-0/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-1/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-2/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-3/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-4/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-5/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-6/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-7/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-8/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-9/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-4-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-0/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-1/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-2/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-3/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-4/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-5/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-6/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-7/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-8/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-9/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-5-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-0/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-1/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-2/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-3/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-4/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-5/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-6/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-7/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-8/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-9/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-9/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-6-9/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-0/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-0/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-0/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-1/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-1/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-1/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-2/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-2/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-2/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-3/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-3/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-3/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-4/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-4/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-4/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-5/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-5/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-5/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-6/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-6/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-6/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-7/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-7/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-7/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-8/kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL305_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-8/SL305_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL306_kidney_atac_redo.barcodes_annotated.end2.fastq.gz 2 barcode_T42_b20_Kidney_PCW17 2 -revcomp | gzip > L4-7-8/SL306_kidney_atac_redo.barcodes_annotated.barcode_T42_b20_Kidney_PCW17.end2.fastq.gz